New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1443157141 (0.750)3 (0.020) 3/178 29.8 0.02 coding (720/867 nt) RCAP_rcc01340 LysR family transcriptional regulator
?NC_014034 2549857 = 158 (0.750)coding (185/252 nt) RCAP_rcc02378 hypothetical protein
Rejected: Position hash score below cutoff.

TGATCCGCGATCGCCGCAGCCACCGCGCGCACCCGGCGCGAGGCGGCAAGTTCCGCGTGGGTGGCCAGGAGGATCGGCCGCTCCATCGGCGCGCCGTCGGGCAGCCGGGCC....................................................................................................  >  NC_014034/1443047‑1443157
....................................................................................................GCAGCCGGGCCAACGCCGCCTCGGGGCAGCCGGTTTCCGCCAGCGCGCGGGCCCAGATCCGCGCCACCGAGGCCGCCGACCAGGGCAGCACCGCCTGCCGCGCCCAGGCCC  >  NC_014034/2549857‑2549956
                                                                                                                                                                                                                   
                                                                         TCGGCCGCTCCATCGGCGCGCCGTCGGGCAGCCGGGCCAACGCCGCCTCGGGGCAGCCGGTTTCCGCCAGCGCGCGGGCCCAGATCCGCGCCACCGAGGCC                                       <  1:3857213/101‑1 (MQ=255)
                                                                          CGGCCGCTCCATCGGCGCGCCGTCGGGCAGCCGGGCCAACGCCGCCTCGGGGCAGCCGGTTTCCGCCAGCGCGCGGGCCCAGATCCGCGCCACCGAGGCCa                                      >  2:3856954/1‑100 (MQ=255)
                                                                                                cgaGGCAGCCGGGCCAACGCCGCCTCGGGGCAGCCGGTTTCCGCCAGCGCGCGGGCCCAGATCCGCGCCACCGAGGCCGCCGACCAGGGCAGCACCGCCTG                <  2:1505810/98‑1 (MQ=255)
                                                                                                                                                                                                                   
TGATCCGCGATCGCCGCAGCCACCGCGCGCACCCGGCGCGAGGCGGCAAGTTCCGCGTGGGTGGCCAGGAGGATCGGCCGCTCCATCGGCGCGCCGTCGGGCAGCCGGGCC....................................................................................................  >  NC_014034/1443047‑1443157
....................................................................................................GCAGCCGGGCCAACGCCGCCTCGGGGCAGCCGGTTTCCGCCAGCGCGCGGGCCCAGATCCGCGCCACCGAGGCCGCCGACCAGGGCAGCACCGCCTGCCGCGCCCAGGCCC  >  NC_014034/2549857‑2549956

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG