| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_014034 | 1473412 = | 142 (0.850) | 3 (0.020) | 3/154 | 27.4 | 0.02 | intergenic (+119/+100) | nadE/RCAP_rcc01367 | NAD(+) synthase (glutamine‑hydrolyzing)/hypothetical protein |
| ? | NC_014034 | 2853100 = | 159 (0.750) | intergenic (+98/+130) | RCAP_rcc02661/RCAP_rcc02662 | DeoR family transcriptional regulator/class II aldolase/adducin N‑terminal domain‑containing protein/short‑chain dehydrogenase/reductase family oxidoreductase | |||||
| Rejected: Position hash score below cutoff. | |||||||||||
AGGCGGCGGTTGGGGGTCTAGGCCCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGCCCTCGGCCAGCGCCCGCCCCGC.................................................................................................. < NC_014034/1473532‑1473412
....................................................................................................CTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGGCTGGCGCCGGCCTCTGGTGTGCTTGGGGATGCGGTCGTGCTGAACCGTTGCCCTGACGGGCGGGGAAAG > NC_014034/2853100‑2853197
GCCCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGCCCTCGGCCAGCGCCCGCCCCGCC < 2:3101676/101‑1 (MQ=1)
CCCCTGCCGTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGCCCTCGGCCAGCGCCCGCCCCGCCC < 2:524555/101‑1 (MQ=1)
CCCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGCCCTCGGCCAGCGCCCGCCCCCCCC > 2:1385584/1‑101 (MQ=1)
CCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGCCCTCGGCCAGCGCCCGGCCCGCCCc > 2:527185/1‑100 (MQ=1)
CCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGCCCTCGGCCAGCGCCCCCCCCCCCCc > 1:3702154/1‑100 (MQ=0)
TGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGCCCTCGGCCAGCGCCCGCCCCGCCCcccg > 1:159173/1‑97 (MQ=11)
TGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGCCCTCGGCCAGCGCCCGCCCCCCCCcccg > 1:3853978/1‑97 (MQ=11)
GCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGCCCTCGGCCAGCGCCCGCCCCCCCCccccc > 1:1433256/1‑96 (MQ=2)
tccAGGCCCTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGGCTGGCGCCGGCCTCTGGTGTGCTTGGGGATGCGGTCGTGCTGA < 1:3367561/98‑1 (MQ=255)
AGGCCCTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGGCTGGCGCCGGCCTCTGGTGTGCTTGGGGATGCGGTCGTGCTGAACC < 1:931736/101‑1 (MQ=255)
CCTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGGCTGGCGCCGGCCTCTGGTGTGCTTGGGGATGCGGTCGTGCTGAACCGTTG < 2:910507/101‑1 (MQ=255)
AGGCGGCGGTTGGGGGTCTAGGCCCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGCCCTCGGCCAGCGCCCGCCCCGC.................................................................................................. < NC_014034/1473532‑1473412
....................................................................................................CTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGGCTGGCGCCGGCCTCTGGTGTGCTTGGGGATGCGGTCGTGCTGAACCGTTGCCCTGACGGGCGGGGAAAG > NC_014034/2853100‑2853197
Base quality scores:
ATCG
< 3 ≤
ATCG
< 22 ≤
ATCG
< 31 ≤
ATCG
< 35 ≤
ATCG
< 41 ≤
ATCG
|