New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1488641 =	201 (1.030)	2 (0.010)	2/184	31.5	0.01	coding (1764/2196 nt)	RCAP_rcc01380	hypothetical protein
	?	NC_014034	3494623 =	182 (0.860)					coding (2744/3855 nt)	RCAP_rcc03301	diguanylate cyclase/phosphodiesterase
Rejected: Position hash score below cutoff.

ACATGCAATTCGCCGACATAGCCGCGGCCGAAATCGTAATAGGCCGAGACATGGCCGGTGGCGGTGTCATAGTCCTGAAAGCCGAAATGCTGGTCGAAATCGCGCTGC....................................................................................................  <  NC_014034/1488748‑1488641 ....................................................................................................CGCGCTGCAGCACCATGTCCCCGGCCTCGTGGCCCAGCGTGTCGTTGACATGCTTGAAATGATCCAGATCGACCCGGATCAGCAGGCAATCGCGCGGACCGGCCGCCG  >  NC_014034/3494623‑3494722                                                                                                                                                                                                                                                                                             TGAAAGCCGAAATGCTGGTCGAAATCGCGCTGCAGCACCATGTCCCCGGCCTCGTGGCCCAGCGTGTCGTTGACATGCTTGAAATGATCCAGATCGACCCG                                  >  2:3472288/1‑101 (MQ=255)                                                                                AGCCGAAATGCTGGTCGAAATCGCGCTGCAGCACCATGTCCCCGGCCTCGTGGCCCAGCGTGTCGTTGACATGCTTGAAATGATCCAGATCGACCCGGATC                              <  1:3472540/101‑1 (MQ=255)                                                                                                                                                                                                                  ACATGCAATTCGCCGACATAGCCGCGGCCGAAATCGTAATAGGCCGAGACATGGCCGGTGGCGGTGTCATAGTCCTGAAAGCCGAAATGCTGGTCGAAATCGCGCTGC....................................................................................................  <  NC_014034/1488748‑1488641 ....................................................................................................CGCGCTGCAGCACCATGTCCCCGGCCTCGTGGCCCAGCGTGTCGTTGACATGCTTGAAATGATCCAGATCGACCCGGATCAGCAGGCAATCGCGCGGACCGGCCGCCG  >  NC_014034/3494623‑3494722 Base quality scores:  ATCG  < 3 ≤  ATCG  < 31 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG