New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1500632211 (1.060)2 (0.010) 2/188 31.8 0.01 coding (748/1059 nt) RCAP_rcc01392 S58 family peptidase
?NC_014034 = 2915942 240 (1.130)intergenic (+48/‑61) RCAP_rcc02723/RCAP_rcc02724 hypothetical protein/ECF family RNA polymerase sigma factor
Rejected: Position hash score below cutoff.

AAGCCGGTCGGCCAGATCCTGACCGAAGACCGGCTGATCGAGACCGAGACCGGCTCGATCATCGTCATCCTTGCCACCGATGCACCGCTGTCTGCCCTGTCGCTGC...................................................................................................  >  NC_014034/1500527‑1500632
....................................................................................................CGCTGCCGGTGTGATTGCCGTGTGTTTGTTATGTGTGGATTGTGTGTGGCGGCCTCAGGGCTCGACGACCACTTCGGCTTGGGCAAGGCCGAGCCGGTAGCCGCG  <  NC_014034/2915942‑2915844
                                                                                                                                                                                                             
                                         GACCGAGACCGGCTCGATCATCGTCATCCTTGCCACCGATGCACCGCTGTCTGCCCTGTCGCTGCCGGTGTGATTGCCGTGTGTTTGTTATGTGTGGATTG                                                                 >  2:536747/1‑101 (MQ=255)
                                                                               ATGCACCGCTGTCTGCCCTGTCGCTGCCGGTGTGATTGCCGTGTGTTTGTTATGTGTGGATTGTGTGTGGCGGCCTCAGGGCTCGACGACCACTTCGGCTT                           <  1:536811/101‑1 (MQ=255)
                                                                                                                                                                                                             
AAGCCGGTCGGCCAGATCCTGACCGAAGACCGGCTGATCGAGACCGAGACCGGCTCGATCATCGTCATCCTTGCCACCGATGCACCGCTGTCTGCCCTGTCGCTGC...................................................................................................  >  NC_014034/1500527‑1500632
....................................................................................................CGCTGCCGGTGTGATTGCCGTGTGTTTGTTATGTGTGGATTGTGTGTGGCGGCCTCAGGGCTCGACGACCACTTCGGCTTGGGCAAGGCCGAGCCGGTAGCCGCG  <  NC_014034/2915942‑2915844

Base quality scores:  ATCG  < 3 ≤  ATCG  < 23 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG