New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1580896 =198 (1.000)2 (0.010) 2/186 31.7 0.01 coding (147/3675 nt) nrdJ2 ribonucleoside‑diphosphate reductase NrdJ
?NC_014034 2730359 = 198 (0.930)coding (68/1926 nt) RCAP_rcc02539 diguanylate cyclase/phosphodiesterase
Rejected: Position hash score below cutoff.

CGGAGCGCCACAGGAATTCGGGCACGCCCTTTTCCTTGACGCGTTTCAGCGCCGCCGGAACGCCCGCCTTGCGGAAGTATTTCTGCGCGATCACATCCGAGGCCACC....................................................................................................  <  NC_014034/1581002‑1580896
....................................................................................................GGCCACCAAAGCCCCGACCGAGGTTCCCTGCACGACACTGGACACATCTTCCGGGCTGGGATGCTTGGTCAGCATCGCCCGGATCCGGGTCAACAGGAGCGGTATCA  >  NC_014034/2730359‑2730458
                                                                                                                                                                                                               
                                                   gatctGGAACGCCCGCCTTGCGGAAGTATTTCTGCGCGATCACATCCGAGGCCACCAAAGCCCCGACCGAGGTTCCCTGCACGACACTGGACACATCTTCC                                                         <  2:1589636/96‑1 (MQ=255)
                                                        GGAACGCCCGCCTTGCGGAAGTATTTCTGCGCGATCACATCCGAGGCCACCAAAGCCCCGACCGAGGTTCCCTGCACGACACTGGACACATCTTCCagatc                                                    >  1:1589745/1‑96 (MQ=255)
                                                                                                                                                                                                               
CGGAGCGCCACAGGAATTCGGGCACGCCCTTTTCCTTGACGCGTTTCAGCGCCGCCGGAACGCCCGCCTTGCGGAAGTATTTCTGCGCGATCACATCCGAGGCCACC....................................................................................................  <  NC_014034/1581002‑1580896
....................................................................................................GGCCACCAAAGCCCCGACCGAGGTTCCCTGCACGACACTGGACACATCTTCCGGGCTGGGATGCTTGGTCAGCATCGCCCGGATCCGGGTCAACAGGAGCGGTATCA  >  NC_014034/2730359‑2730458

Base quality scores:  ATCG  < 3 ≤  ATCG  < 29 ≤  ATCG  < 32 ≤  ATCG  < 35 ≤  ATCG  < 40 ≤  ATCG