New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1635434 =	173 (0.890)	2 (0.010)	2/184	31.5	0.01	intergenic (‑221/‑22)	RCAP_rcc01507/RCAP_rcc01508	hypothetical protein/LuxR family two component transcriptional regulator
	?	NC_014034	1821213 =	152 (0.720)					coding (719/1191 nt)	RCAP_rcc01684	HK97 family phage portal protein
Rejected: Position hash score below cutoff.

TCGTCGCAGCCGCCCGCGCGCAACAGCGCCGCGATCGCATCGCGCACGAGATCATGGTCGTCGGCAATCAGCAATCTCACCTTCACCTCCGAAAATCCCGGCCCGAGC....................................................................................................  <  NC_014034/1635541‑1635434 ....................................................................................................GCCCGAGCAATATGAGCGGCTCATTTTCGAGATGGAGACGCATCATCAGGGCGCGCGGAATGCCGGGCGGCCGATGCTTTTGGAAGGCGGGCTCGACTGGAAGCCGAT  >  NC_014034/1821213‑1821312                                                                                                                                                                                                                                                            CGCACGAGATCATGGTCGTCGGCAATCAGCAATCTCACCTTCACCTCCGAAAATCCCGGCCCGAGCAATATGAGCGGCTCATTTTCGAGATGGAGACGCAT                                                                   >  1:2728029/1‑101 (MQ=255)                                                  GATCATGGTCGTCGGCAATCAGCAATCTCACCTTCACCTCCGAAAATCCCGGCCCGAGCAATATGAGCGGCTCATTTTCGAGATGGAGACGCATCATCAGG                                                            <  2:2727823/101‑1 (MQ=255)                                                                                                                                                                                                                  TCGTCGCAGCCGCCCGCGCGCAACAGCGCCGCGATCGCATCGCGCACGAGATCATGGTCGTCGGCAATCAGCAATCTCACCTTCACCTCCGAAAATCCCGGCCCGAGC....................................................................................................  <  NC_014034/1635541‑1635434 ....................................................................................................GCCCGAGCAATATGAGCGGCTCATTTTCGAGATGGAGACGCATCATCAGGGCGCGCGGAATGCCGGGCGGCCGATGCTTTTGGAAGGCGGGCTCGACTGGAAGCCGAT  >  NC_014034/1821213‑1821312 Base quality scores:  ATCG  < 3 ≤  ATCG  < 29 ≤  ATCG  < 32 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG