New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1640006 =	81 (0.420)	13 (0.070)	3/184	30.3	0.11	intergenic (+86/‑59)	mccB/mccA	methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha
	?	NC_014034	= 1729761	131 (0.620)					intergenic (+135/+18)	RCAP_rcc01597/tpiA	AsnC/Lrp family transcriptional regulator/triose‑phosphate isomerase
Rejected: Position hash score below cutoff.

CCCGACAGGCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGC...................................................................................................  <  NC_014034/1640113‑1640006 ....................................................................................................GGGGGCGCTGCCCCCAGACCCCCGGGATATTTGGAGCAAGATGAAATCAGCTCCGGTTGTTTTTCATCTTGCTCCAAATATCCCGGGGGGTGAATGGCCGCGAGGCC  <  NC_014034/1729761‑1729663                                                                                                                                                                                                                         GCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCT                                                                                                    <  1:2273980/101‑1 (MQ=1)         GCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCT                                                                                                    <  2:4070547/101‑1 (MQ=1)          CGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG                                                                                                   <  2:306223/101‑1 (MQ=1)             TCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCC                                                                                                <  2:2053851/101‑1 (MQ=1)                cgcCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCc                                                                                             <  2:3565146/98‑2 (MQ=1)                CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCc                                                                                             <  2:1130248/101‑2 (MQ=1)                CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCc                                                                                             <  2:4049892/101‑2 (MQ=1)                 GGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcg                                                                                            <  2:1975314/101‑3 (MQ=1)                  GCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcgg                                                                                           <  1:3313296/101‑4 (MQ=1)                      TGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcgggccc                                                                                       <  2:2196054/101‑8 (MQ=1)                      TGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcgggccc                                                                                       <  2:2985159/101‑8 (MQ=1)                       GTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcgggcccc                                                                                      <  2:853025/101‑9 (MQ=1)                        TTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcgggccccc                                                                                     <  2:3486806/101‑10 (MQ=1)                                                                                                                                                                                                                 CCCGACAGGCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGC...................................................................................................  <  NC_014034/1640113‑1640006 ....................................................................................................GGGGGCGCTGCCCCCAGACCCCCGGGATATTTGGAGCAAGATGAAATCAGCTCCGGTTGTTTTTCATCTTGCTCCAAATATCCCGGGGGGTGAATGGCCGCGAGGCC  <  NC_014034/1729761‑1729663 Base quality scores:  ATCG  < 3 ≤  ATCG  < 21 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 37 ≤  ATCG