BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1640006 =	81 (0.410)	34 (0.170)	10/188	24.6	0.22	intergenic (+86/‑59)	mccB/mccA	methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha
*	?	NC_014034	2209686 =	166 (0.780)	34 (0.170)	10/188	24.6	0.22	intergenic (+18/‑253)	cobO/cobQ1	cob(I)yrinic acid a,c‑diamide adenosyltransferase/cobyric acid synthase CobQ
Rejected: Position hash score below cutoff.


CGACAGGCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGC.....................................................................................................  <  NC_014034/1640111‑1640006


....................................................................................................GGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGTACAGGGAGGGAT  >  NC_014034/2209686‑2209785


      GCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCT                                                                                                      <  2:4070547/101‑1 (MQ=1)


      GCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCT                                                                                                      <  1:2273980/101‑1 (MQ=1)


       CGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG                                                                                                     <  2:306223/101‑1 (MQ=1)


          TCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG.CCC                                                                                                 <  2:2053851/101‑1 (MQ=1)


             cgcCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG.CCCCCc                                                                                              <  2:3565146/98‑2 (MQ=1)


             CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG.CCCCCc                                                                                              <  2:4049892/101‑2 (MQ=1)


             CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG.CCCCCc                                                                                              <  2:1130248/101‑2 (MQ=1)


              GGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG.CCCCCcg                                                                                             <  2:1975314/101‑3 (MQ=1)


               GCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG.CCCCCcgg                                                                                            <  1:3313296/101‑4 (MQ=1)


                   TGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG.CCCCCcgggccc                                                                                        <  2:2196054/101‑8 (MQ=1)


                   TGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG.CCCCCcgggccc                                                                                        <  2:2985159/101‑8 (MQ=1)


                    GTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG.CCCCCcgggcccc                                                                                       <  2:853025/101‑9 (MQ=1)


                     TTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCC                                                                                       <  2:3486806/101‑1 (MQ=1)


                                                                                      gatctcaaGGCCGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCA                     <  2:3321146/93‑1 (MQ=255)


                                                                                      gatctcaaGGCCGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCA                     <  2:2957039/93‑1 (MQ=255)


                                                                                      gatctcaaGGCCGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCA                     >  1:2096514/9‑101 (MQ=255)


                                                                                      gatctcaaGGCCGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCA                     <  1:1508251/93‑1 (MQ=255)


                                                                                        tctcaaGGCCGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAAC                   <  1:3423722/95‑1 (MQ=255)


                                                                                        tctcaaGGCCGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAAC                   <  1:1463992/95‑1 (MQ=255)


                                                                                         ctcaaGGCCGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACA                  <  2:187058/96‑1 (MQ=255)


                                                                                         ctcaaGGCCGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACA                  <  1:1637791/96‑1 (MQ=255)


                                                                                          tcaaGGCCGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACAC                 <  1:2756402/97‑1 (MQ=255)


                                                                                           caaGGCCGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACG                >  2:730504/4‑101 (MQ=255)


                                                                                           caaGGCCGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACG                >  2:739926/4‑101 (MQ=255)


                                                                                             aGGCCGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGT              <  2:1555484/100‑1 (MQ=255)


                                                                                             aGGCCGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGT              <  1:8122/100‑1 (MQ=255)


                                                                                             aGGCCGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGT              <  1:433225/100‑1 (MQ=255)


                                                                                             aGGCCGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGT              <  1:1338851/100‑1 (MQ=255)


                                                                                              GGCCGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGTA             <  2:4222570/101‑1 (MQ=255)


                                                                                                ccGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGTACA           <  1:887848/99‑1 (MQ=255)


                                                                                                ccGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGTACA           <  2:4092007/99‑1 (MQ=255)


                                                                                                  GGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGTACAGG         >  1:3002071/1‑101 (MQ=255)


                                                                                                  GGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGTACAGG         >  1:2604407/1‑101 (MQ=255)


                                                                                                  GGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGTACAGG         <  1:1477951/101‑1 (MQ=255)


CGACAGGCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGC.....................................................................................................  <  NC_014034/1640111‑1640006


....................................................................................................GGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGTACAGGGAGGGAT  >  NC_014034/2209686‑2209785

Base quality scores:


ATCG

< 3 ≤


ATCG

< 23 ≤


ATCG

< 30 ≤


ATCG

< 34 ≤


ATCG

< 41 ≤


ATCG