New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1640006 =	44 (0.230)	41 (0.220)	10/178	23.7	0.35	intergenic (+86/‑59)	mccB/mccA	methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha
	?	NC_014034	= 2494052	107 (0.510)					intergenic (+100/‑142)	RCAP_rcc02319/RCAP_rcc02320	hypothetical protein/hypothetical protein
Rejected: Position hash score below cutoff.

GCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGC..............................................................................................................  <  NC_014034/1640105‑1640006 ...............................................................................................................CCCCCCGGGATATTTCGGGCAAGATGAAAGGCATCCGGTTTCATCTTGCTGCAAATATCCCGGGGGGAGTCCGCTTGCGGAACGGGGGCAGCGCCCCCC  <  NC_014034/2494052‑2493954                                                                                                     |||||||||||                                                                                                    GCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCT                                                                                                               <  2:4070547/101‑1 (MQ=1) GCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCT                                                                                                               <  1:2273980/101‑1 (MQ=1)  CGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG                                                                                                              <  2:306223/101‑1 (MQ=1)     TCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCC                                                                                                           <  2:2053851/101‑1 (MQ=1)        cgcCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCC                                                                                                        <  2:3565146/98‑1 (MQ=1)        CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCC                                                                                                        <  2:1130248/101‑1 (MQ=1)        CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCC                                                                                                        <  2:4049892/101‑1 (MQ=1)         GGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCG                                                                                                       <  2:1975314/101‑1 (MQ=1)          GCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGG                                                                                                      <  1:3313296/101‑1 (MQ=1)              TGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCC                                                                                                  <  2:2985159/101‑1 (MQ=1)              TGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCC                                                                                                  <  2:2196054/101‑1 (MQ=1)               GTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCC                                                                                                 <  2:853025/101‑1 (MQ=1)                TTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCC                                                                                                <  2:3486806/101‑1 (MQ=1)                 TGGCGATCAGGATCTTTTGAAACATCGCGTTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCC                                                                                               <  2:527490/101‑1 (MQ=1)                   GCGATCAGGATCTTTTGANACATCGCGGTCNCCTTCGTCAACNGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGG                                                                                             <  1:247721/101‑1 (MQ=1)                    nGATCNGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGn                                                                                            <  1:963020/100‑2 (MQ=1)                      ATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGAT                                                                                          <  1:4056427/101‑1 (MQ=1)                      ATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGAT                                                                                          <  2:2341522/101‑1 (MQ=1)                       TCAGGATCTTTTGAAACATCGCGGTCTCCTTCGACAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATA                                                                                         <  1:3677459/101‑1 (MQ=1)                        CAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATAT                                                                                        <  1:2178667/101‑1 (MQ=1)                        CAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATAT                                                                                        <  2:47642/101‑1 (MQ=1)                         AGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATT                                                                                       <  1:2303192/101‑1 (MQ=1)                          GGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTT                                                                                      <  2:3708778/101‑1 (MQ=1)                          GGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTT                                                                                      <  1:939176/101‑1 (MQ=1)                              CTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGG                                                                                  <  2:1861649/101‑1 (MQ=1)                                TTTGAAACATCGCGGTCTGCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCA                                                                                <  1:4015837/101‑1 (MQ=1)                                  TGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCTCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAG                                                                              <  2:1398167/101‑1 (MQ=1)                                  TGAAACATCGCGGTCTCCTTCGTCAACGGCCGGAGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAG                                                                              <  1:3643864/101‑1 (MQ=1)                                   GAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGA                                                                             <  2:3738016/101‑1 (MQ=1)                                   GAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGA                                                                             <  2:4220085/101‑1 (MQ=1)                                    AAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGAT                                                                            <  1:3487541/101‑1 (MQ=1)                                     acCATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATG                                                                           <  1:980072/99‑1 (MQ=1)                                     AACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATG                                                                           <  2:1963307/101‑1 (MQ=1)                                     AACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATG                                                                           <  2:1814031/101‑1 (MQ=1)                                     AACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATG                                                                           <  1:204490/101‑1 (MQ=1)                                      ACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGA                                                                          <  1:15707/101‑1 (MQ=1)                                      ACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGA                                                                          <  1:1838639/101‑1 (MQ=1)                                      ACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGA                                                                          <  1:2241139/101‑1 (MQ=1)                                       CATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAA                                                                         <  1:1091080/101‑1 (MQ=1)                                       CATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAA                                                                         <  2:3563178/101‑1 (MQ=1)                                        ATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAA                                                                        <  1:2824194/101‑1 (MQ=1)                                         TCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAG                                                                       <  1:2484647/101‑1 (MQ=1)                                          CGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGG                                                                      <  2:4164487/101‑1 (MQ=1)                                           GCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGg                                                                     <  1:478407/101‑2 (MQ=1)                                            CGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGga                                                                    <  1:2684234/101‑3 (MQ=11)                                            CGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGga                                                                    <  1:1624093/101‑3 (MQ=11)                                             GGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGGAT                                                                   <  1:1408632/101‑1 (MQ=31)                                              GTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGGATg                                                                  <  2:1430903/101‑2 (MQ=32)                                                CTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGGATggg                                                                <  1:4188376/101‑4 (MQ=34)                                                 TCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGGATgggt                                                               <  2:3396684/101‑5 (MQ=35)                                                                                                              cGCCCCCGGGGATATTTCGGGCAAGATGAAAGGCATCCGGTTTCATCTTGCTGCAAATATCCCGGGGGGAGTCCGCTTGCGGACGGGGGGCAGCGCCCCCC  <  1:4000270/100‑1 (MQ=255)                                                                                                     |||||||||||                                                                                                    GCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGC..............................................................................................................  <  NC_014034/1640105‑1640006 ...............................................................................................................CCCCCCGGGATATTTCGGGCAAGATGAAAGGCATCCGGTTTCATCTTGCTGCAAATATCCCGGGGGGAGTCCGCTTGCGGAACGGGGGCAGCGCCCCCC  <  NC_014034/2494052‑2493954 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG