New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1729639 =	127 (0.660)	29 (0.150)	3/182	30.1	0.28	intergenic (+13/+140)	RCAP_rcc01597/tpiA	AsnC/Lrp family transcriptional regulator/triose‑phosphate isomerase
	?	NC_014034	2600961 =	22 (0.100)					intergenic (+23/‑118)	RCAP_rcc02424/surE	short‑chain dehydrogenase/reductase family oxidoreductase/5'‑nucleotidase SurE
Rejected: Position hash score below cutoff.

GGGATATTTGGAGCAAGATGAAATCAGCTCCGGTTGTTTTTCATCTTGCTCCAAATATCCCGGGGGGTGAATGGCCGCGAGGCCAGAGGGGGCAGCGCCCCCCTGCCC...................................................................................................  <  NC_014034/1729746‑1729639 ...................................................................................................CCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCAGACAGAA  >  NC_014034/2600961‑2601059                                                                                                                                                                                                                                                                                                   caAGAGGGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCG                         >  1:2004063/3‑101 (MQ=34)                                                                                   caAGAGGGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCG                         >  1:3124697/3‑101 (MQ=34)                                                                                    aAGAGGGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTTTTTGGCTGCGG                        >  1:1651495/2‑101 (MQ=18)                                                                                    aAGAGGGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTTGCTGCGG                        >  1:3160091/2‑101 (MQ=18)                                                                                    aAGAGGGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGgcg                        >  2:3334344/2‑98 (MQ=18)                                                                                    aAGAGGGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGG                        >  1:507167/2‑101 (MQ=33)                                                                                     AGAGGGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGGTGCGGg                       >  1:1082958/1‑100 (MQ=17)                                                                                     AGAGGGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGC                       <  2:3088874/101‑1 (MQ=32)                                                                                       AGGGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTTCTTGTTTTGCTGCGGCGC                     >  2:1583442/1‑101 (MQ=2)                                                                                       AGGGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTTTTTGGCTGCGGCGC                     >  2:1448081/1‑101 (MQ=11)                                                                                       AGGGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGC                     >  2:4142465/1‑101 (MQ=11)                                                                                        GGGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGTGGCGCc                    >  2:3529174/1‑100 (MQ=1)                                                                                        GGGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCA                    <  2:572915/101‑1 (MQ=1)                                                                                        GGGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCA                    <  2:2417415/101‑1 (MQ=1)                                                                                        GGGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCA                    >  2:3721080/1‑101 (MQ=1)                                                                                         GGGGCAGCCCCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCA                    <  1:1879262/101‑1 (MQ=25)                                                                                          GGGCGGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGC                  <  1:3895997/101‑1 (MQ=1)                                                                                          GGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGC                  <  2:4077895/101‑1 (MQ=1)                                                                                          GGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGC                  >  2:687167/1‑101 (MQ=1)                                                                                          GGGCAGCG.CCCCCGGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGC                  <  1:1306299/101‑1 (MQ=1)                                                                                             CAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGC               >  2:3395620/1‑101 (MQ=1)                                                                                              cggcCCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGC               <  1:3518974/97‑1 (MQ=11)                                                                                               agcgCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCT              >  2:822254/5‑101 (MQ=1)                                                                                               agcgCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCT              >  1:1478155/5‑101 (MQ=1)                                                                                                gcgCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCGGCGGCGCAGCGGCTt             >  1:3837053/4‑100 (MQ=1)                                                                                                 cgCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAA            >  1:945821/3‑101 (MQ=1)                                                                                                 cgCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAA            >  1:925394/3‑101 (MQ=1)                                                                                                  gCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGGGGCGCAGCGGCTAAT           >  1:1844872/2‑101 (MQ=1)                                                                                                   CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCCGCGGCTAATC          >  2:3382109/1‑101 (MQ=1)                                                                                                                                                                                                                 GGGATATTTGGAGCAAGATGAAATCAGCTCCGGTTGTTTTTCATCTTGCTCCAAATATCCCGGGGGGTGAATGGCCGCGAGGCCAGAGGGGGCAGCGCCCCCCTGCCC...................................................................................................  <  NC_014034/1729746‑1729639 ...................................................................................................CCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCAGACAGAA  >  NC_014034/2600961‑2601059 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG