New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1825720161 (0.790)2 (0.010) 2/192 32.2 0.01 coding (39/327 nt) RCAP_rcc01692 hypothetical protein
?NC_014034 3418531 = 191 (0.900)coding (853/1038 nt) ruvB holliday junction DNA helicase RuvB
Rejected: Position hash score below cutoff.

GGCGAGTTACGAACTGGCGATGGCCTCGGCGGGCGCGCTGAGCTTCACGGCGATCTGAGGCGGGCATGGCAAACCCTTGGGCGGGCGAGGTCGAGATCTGGCTG....................................................................................................  >  NC_014034/1825617‑1825720
....................................................................................................GCTGTCCGCCGCGCTGTCGGAAAGCCGCGATGCGCTGGAAGAGGTGATCGAGCCTTACCTTTTACAGCAGGGTCTCATTCAGCGCACCCCGCGCGGGCGGATGC  >  NC_014034/3418531‑3418630
                                                                                                                                                                                                            
                                      TGAGCTTCACGGCGATCTGAGGCGGGCATGGCAAACCCTTGGGCGGGCGAGGTCGAGATCTGGCTGTCCGCCGCGCTGTCGGAAAGCCGCGATGCGCTGGA                                                                   >  1:3719099/1‑101 (MQ=255)
                                                                            TTGGGCGGGCGAGGTCGAGATCTGGCTGTCCGCCGCGCTGTCGGAAAGCCGCGATGCGCTGGAAGAGGTGATCGAGCCTTACCTTTTACAGCAGGGTCTCA                             <  2:3718845/101‑1 (MQ=255)
                                                                                                                                                                                                            
GGCGAGTTACGAACTGGCGATGGCCTCGGCGGGCGCGCTGAGCTTCACGGCGATCTGAGGCGGGCATGGCAAACCCTTGGGCGGGCGAGGTCGAGATCTGGCTG....................................................................................................  >  NC_014034/1825617‑1825720
....................................................................................................GCTGTCCGCCGCGCTGTCGGAAAGCCGCGATGCGCTGGAAGAGGTGATCGAGCCTTACCTTTTACAGCAGGGTCTCATTCAGCGCACCCCGCGCGGGCGGATGC  >  NC_014034/3418531‑3418630

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG