New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1832811 =150 (0.760)2 (0.010) 2/186 31.7 0.01 coding (33/417 nt) RCAP_rcc01699 hypothetical protein
?NC_014034 2178531 = 165 (0.780)coding (301/945 nt) RCAP_rcc02021 DeoR family transcriptional regulator
Rejected: Position hash score below cutoff.

CGCCAGCCGCTTGCGGTAAAGATCGGCCCAATGCGCCTCGCGCAACCATTGTGCCAGCCGCGCCGGACGCTCGGGGGCAGAGAGCGCCGCCACCGCCCGCGCCGCG....................................................................................................  <  NC_014034/1832916‑1832811
...................................................................................................CGCCGCGGCGCAGCTGCTGGAACGCTACCTTGCCCAGCCCGAGCCGCTGATCATCGCCTTCGGCACCGGCCGCTCGCTCTCGGCGATGGCGGCCGAGGTGATCCGCA  >  NC_014034/2178531‑2178630
                                                                                                                                                                                                              
                            tAATGCGCCTCGCGCAACCATTGTGCCAGCCGCGCCGGACGCTCGGGGGCAGAGAGCGCCGCCACCGCCCGCGCCGCGGCGCAGCTGCTGGAACGCTACCT                                                                               <  1:2467615/100‑1 (MQ=255)
                             AATGCGCCTCGCGCAACCATTGTGCCAGCCGCGCCGGACGCTCGGGGGCAGAGAGCGCCGCCACCGCCCGCGCCGCGGCGCAGCTGCTGGAACGCTACCTa                                                                              >  2:2467431/1‑100 (MQ=255)
                                                                                                                                                                                                              
CGCCAGCCGCTTGCGGTAAAGATCGGCCCAATGCGCCTCGCGCAACCATTGTGCCAGCCGCGCCGGACGCTCGGGGGCAGAGAGCGCCGCCACCGCCCGCGCCGCG....................................................................................................  <  NC_014034/1832916‑1832811
...................................................................................................CGCCGCGGCGCAGCTGCTGGAACGCTACCTTGCCCAGCCCGAGCCGCTGATCATCGCCTTCGGCACCGGCCGCTCGCTCTCGGCGATGGCGGCCGAGGTGATCCGCA  >  NC_014034/2178531‑2178630

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 30 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG