New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 2077692 =228 (1.170)2 (0.010) 2/184 31.5 0.01 coding (771/861 nt) RCAP_rcc01921 hypothetical protein
?NC_014034 2703589 = 182 (0.860)coding (820/1056 nt) RCAP_rcc02518 type 12 family methyltransferase
Rejected: Position hash score below cutoff.

GTTCAGACGCGCCTCAGGCCGGAAGCGCCGAGGCAATGAGCGATGTAAGGTCTTTCTCGTCGCGGACAAGAGCCACATCTGACGCAGCCACCTTGACCCCCCAG....................................................................................................  <  NC_014034/2077795‑2077692
................................................................................................CCCCCCAGGACACGCCGCAGGACGCGGACGACTTCCACCGCCGCCGGGCCGCGCTGCTGCGCGCCGTGGCGTTGCGGATGGGCGAAACGCCGTTCCTGAGCACGCCGC  >  NC_014034/2703589‑2703688
                                                                                                                                                                                                            
                                                                  CAAGAGCCACATCTGACGCAGCCACCTTGACCCCCCAGGACACGCCGCAGGACGCGGACGACTTCCACCGCCGCCGGGCCGCGCTGCTGCGCGCCGTGGCG                                       >  2:396793/1‑101 (MQ=255)
                                                                     GAGCCACATCTGACGCAGCCACCTTGACCCCCCAGGACACGCCGCAGGACGCGGACGACTTCCACCGCCGCCGGGCCGCGCTGCTGCGCGCCGTGGCGTTG                                    <  1:396844/101‑1 (MQ=255)
                                                                                                                                                                                                            
GTTCAGACGCGCCTCAGGCCGGAAGCGCCGAGGCAATGAGCGATGTAAGGTCTTTCTCGTCGCGGACAAGAGCCACATCTGACGCAGCCACCTTGACCCCCCAG....................................................................................................  <  NC_014034/2077795‑2077692
................................................................................................CCCCCCAGGACACGCCGCAGGACGCGGACGACTTCCACCGCCGCCGGGCCGCGCTGCTGCGCGCCGTGGCGTTGCGGATGGGCGAAACGCCGTTCCTGAGCACGCCGC  >  NC_014034/2703589‑2703688

Base quality scores:  ATCG  < 3 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG