New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 2127955 =187 (0.940)2 (0.010) 2/188 31.8 0.01 coding (2438/2742 nt) gyrA DNA gyrase subunit A
?NC_014034 3076555 = 191 (0.900)coding (558/1032 nt) RCAP_rcc02879 monosacharide ABC transporter permease
Rejected: Position hash score below cutoff.

CCGACCGCGATGCCGAGGATGAGGCCGAGGGCGGCGAAGGCGTGCTGTCGGATGCCCGTTATGCCGAAATGCTGGCGGCGCAGGATCTGATCCTGACGATCACCGC....................................................................................................  <  NC_014034/2128060‑2127955
....................................................................................................CACCGCATGAAAGGCCCGCGCGGCGCGGATCTTCCAAAGCAGGATCGCCACGATGATCACCAGCGCCGCCACCGCCCAGACCATCAAGGGCACGTTGAAATAGCGG  >  NC_014034/3076555‑3076654
                                                                                                                                                                                                              
                                                                        atctGGCGCAGGATCTGATCCTGACGATCACCGCATGAAAGGCCCGCGCGGCGCGGATCTTCCAAAGCAGGATCGCCACGATGATCACCAGCGCCGCCACC                                   <  1:970728/97‑1 (MQ=255)
                                                                            GGCGCAGGATCTGATCCTGACGATCACCGCATGAAAGGCCCGCGCGGCGCGGATCTTCCAAAGCAGGATCGCCACGATGATCACCAGCGCCGCCACCagat                               >  2:970637/1‑97 (MQ=255)
                                                                                                                                                                                                              
CCGACCGCGATGCCGAGGATGAGGCCGAGGGCGGCGAAGGCGTGCTGTCGGATGCCCGTTATGCCGAAATGCTGGCGGCGCAGGATCTGATCCTGACGATCACCGC....................................................................................................  <  NC_014034/2128060‑2127955
....................................................................................................CACCGCATGAAAGGCCCGCGCGGCGCGGATCTTCCAAAGCAGGATCGCCACGATGATCACCAGCGCCGCCACCGCCCAGACCATCAAGGGCACGTTGAAATAGCGG  >  NC_014034/3076555‑3076654

Base quality scores:  ATCG  < 3 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG