New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 2146457174 (0.820)2 (0.010) 2/200 32.8 0.01 coding (27/561 nt) RCAP_rcc01988 hypothetical protein
?NC_014034 = 3040303 238 (1.120)coding (191/2454 nt) dorS DMSO/TMAO‑sensor hybrid histidine kinase
Rejected: Position hash score below cutoff.

CATGGCCAGGCTGGTCACGGTAAGATTT..............................................................................  >  NC_014034/2146430‑2146457
.............................TGCAGGGGCTCAATGGCGCCATCGCGCTGATGCTGGAAACCCGCGGCGCCGCCGAGGCCGATTACGACAGCGACATC  <  NC_014034/3040303‑3040227
                                                                                                          
gatctCCAGGCTGGTCACGGTAAGATTTCTGCAGGGGCTCAATGGCGCCATCGCGCTGATGCTGGAAACCCGCGGCGCCGCCGAGGCCGATTACGACAGCG       <  1:30978/96‑1 (MQ=255)
     CCAGGCTGGTCACGGTAAGATTTCTGCAGGGGCTCAATGGCGCCATCGCGCTGATGCTGGAAACCCGCGGCGCCGCCGAGGCCGATTACGACAGCGAGATC  >  2:30963/1‑101 (MQ=255)
                                                                                                          
CATGGCCAGGCTGGTCACGGTAAGATTT..............................................................................  >  NC_014034/2146430‑2146457
.............................TGCAGGGGCTCAATGGCGCCATCGCGCTGATGCTGGAAACCCGCGGCGCCGCCGAGGCCGATTACGACAGCGACATC  <  NC_014034/3040303‑3040227

Base quality scores:  ATCG  < 3 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG