New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2185845	47 (0.230)	49 (0.240)	25/194	17.0	0.51	intergenic (+118/‑387)	mtlK/RCAP_rcc02028	mannitol 2‑dehydrogenase/FeoA family protein
	?	NC_014034	2330182 =	47 (0.220)					intergenic (+157/+155)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

GCCCCGGAACAGGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCC....................................................................................................  >  NC_014034/2185743‑2185845 .....................................................................................................CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCC  >  NC_014034/2330182‑2330281                                                                                                                                                                                                                 CCGGAACAGGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCGTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCC                                                                                                     <  2:326496/101‑1 (MQ=11)    CCGGAACAGGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCC                                                                                                     <  2:2488572/101‑1 (MQ=11)    CCGGAACAGGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCC                                                                                                     <  1:1638225/101‑1 (MQ=11)     CGGAACAGGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCCGGGGGTCCGCCCCCc                                                                                                    >  2:3791873/1‑100 (MQ=2)      GGACCAGGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGC                                                                                                   <  1:1914308/101‑1 (MQ=17)      GGAACAGGCGGCCCCGCTCCCTCCCGGGCGGGGCAGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGC                                                                                                   <  1:1881984/101‑1 (MQ=17)       GAACAGGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCA                                                                                                  <  2:4036593/101‑1 (MQ=33)        AACAGGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCAC                                                                                                 <  2:2880180/101‑1 (MQ=34)         ACAGGCGGCCCCGCGCCCGCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACC                                                                                                <  1:3208628/101‑1 (MQ=255)          CAGGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCC                                                                                               >  2:3851449/1‑101 (MQ=35)           AGGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCGCCGCCCCCGCCCCCC                                                                                              >  1:3454713/1‑101 (MQ=19)            GGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCC                                                                                             <  1:1271437/101‑1 (MQ=35)            GGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCC                                                                                             <  1:2741386/101‑1 (MQ=35)            GGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCGGATGTGCAAATCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCC                                                                                             <  1:43915/101‑1 (MQ=255)               GGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGC                                                                                          <  1:316544/101‑1 (MQ=37)                     GCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTT                                                                                    <  1:2676140/101‑1 (MQ=40)                     GCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTT                                                                                    <  2:2612046/101‑1 (MQ=40)                      CTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGCCCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTa                                                                                   <  2:3466269/101‑2 (MQ=255)                        CCCTCCCGGGCGGGTCCGGCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTatc                                                                                 <  2:2867915/101‑4 (MQ=255)                        CCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTatc                                                                                 >  1:3516572/1‑98 (MQ=255)                        CCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTatc                                                                                 <  1:1232447/101‑4 (MQ=255)                        CCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTatc                                                                                 <  2:2214815/101‑4 (MQ=255)                         CCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGCCCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTatcc                                                                                <  1:3160636/101‑5 (MQ=255)                           TCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTTCGCCCCCGCACCCCCGGCGTATTTatccca                                                                              >  2:1658432/1‑95 (MQ=255)                           TCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTatccca                                                                              <  1:2637422/101‑7 (MQ=255)                               GGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTATCCCAAGAA                                                                          <  1:1225076/101‑1 (MQ=255)                                GGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTATCCCAAGAAA                                                                         <  1:4083513/101‑1 (MQ=255)                                  CGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTATCCCAAGAAAAA                                                                       <  2:3216645/101‑1 (MQ=255)                                   GGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTATCCCAAGAAAAAG                                                                      <  1:3836392/101‑1 (MQ=255)                                                                              cGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGG                            <  2:2392385/100‑1 (MQ=32)                                                                               GGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGC                           <  2:326758/101‑1 (MQ=32)                                                                                 cgacccggGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGG                         <  2:3224420/93‑1 (MQ=32)                                                                                  gacccggGCGGGGGCTCCGCCACCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGC                        >  1:3113298/8‑101 (MQ=17)                                                                                    cccggGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTT                      <  1:3017957/96‑1 (MQ=32)                                                                                     ccggGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTT                     >  1:2991566/5‑101 (MQ=32)                                                                                      cggGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGGCCGGGCGGgcttc                    >  2:1644393/4‑96 (MQ=12)                                                                                      cggGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTC                    <  2:2944389/98‑1 (MQ=32)                                                                                       ggGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCA                   >  1:3473446/3‑101 (MQ=31)                                                                                        gGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCAC                  <  1:2336420/100‑1 (MQ=11)                                                                                           GGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACacg               >  2:3567994/1‑98 (MQ=1)                                                                                           GGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTG               <  1:2533698/101‑1 (MQ=1)                                                                                              GGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCCCCTGGGG            >  1:817015/1‑101 (MQ=1)                                                                                                CTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGCGGCC          >  2:2643662/1‑101 (MQ=1)                                                                                                 TCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCA         >  1:3264524/1‑101 (MQ=1)                                                                                                   CGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAca       <  1:2811516/101‑3 (MQ=1)                                                                                                   CGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAA       >  1:3904491/1‑101 (MQ=1)                                                                                                   CGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAA       <  1:2282420/101‑1 (MQ=1)                                                                                                    GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAG      <  1:3533946/101‑1 (MQ=1)                                                                                                     CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGA     >  2:49183/1‑101 (MQ=1)                                                                                                                                                                                                              GCCCCGGAACAGGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCC....................................................................................................  >  NC_014034/2185743‑2185845 .....................................................................................................CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCC  >  NC_014034/2330182‑2330281 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG