New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221943 =188 (0.940)5 (0.030) 2/188 31.8 0.01 coding (714/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222062 688 (3.250)coding (595/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

CACG..................................................................................................  <  NC_014034/221946‑221943
..........ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCAC  <  NC_014034/222062‑221971
    ||||||                                                                                            
gACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCA   >  2:1294308/2‑101 (MQ=0)
gACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACGCGACCGATCCC  >  2:437879/2‑100 (MQ=2)
gACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGAACCCA   >  2:3340822/2‑101 (MQ=2)
 ACGGACCCCACGGACCCGACCGATCCCACGGACCCGCCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCAC  <  2:253771/101‑1 (MQ=0)
 ACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGCCCGATCCCACGGACCCGACCGATCCCAC  >  1:3861088/1‑101 (MQ=0)
    ||||||                                                                                            
CACG..................................................................................................  <  NC_014034/221946‑221943
..........ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCAC  <  NC_014034/222062‑221971

Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 20 ≤  ATCG  < 30 ≤  ATCG  < 41 ≤  ATCG