New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221953 =229 (1.100)23 (0.110) 3/196 31.3 0.07 coding (704/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222105 387 (1.830)coding (552/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC..................................  <  NC_014034/222053‑221953
...................................................................................................ACGGATCCGACCGATCCCACGGACCCGACGGACCCG  <  NC_014034/222105‑222072
                                                                                                                                       
 CCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACG                                   <  1:3582881/101‑1 (MQ=0)
                CGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGAGCCGACCGATCCg                    >  2:2772172/1‑100 (MQ=12)
                        CCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCC            <  2:3206853/101‑1 (MQ=12)
                        CCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCC            >  1:1294453/1‑101 (MQ=12)
                        CCCACGGACCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCC            <  2:1707676/101‑1 (MQ=12)
                         CCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG           >  1:1359078/1‑101 (MQ=12)
                         CCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG           <  2:2540169/101‑1 (MQ=12)
                         CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGACCCCACGGACCCG           >  1:2918082/1‑101 (MQ=9)
                          CACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGA          >  1:2246553/1‑101 (MQ=12)
                            CGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACG        >  1:2697901/1‑101 (MQ=9)
                            CGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACG        >  1:3851333/1‑101 (MQ=9)
                            CGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACCGACCCGACc        >  1:1021694/1‑100 (MQ=9)
                             GGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGG       >  1:528071/1‑101 (MQ=2)
                             GGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGG       <  1:3273057/101‑1 (MQ=2)
                             GGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGG       >  1:1627026/1‑101 (MQ=2)
                              gcCCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGA      <  2:528007/99‑1 (MQ=0)
                              GACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGA      >  1:2327748/1‑101 (MQ=2)
                               ACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGAC     >  2:2171667/1‑101 (MQ=2)
                                CCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACC    >  1:629591/1‑101 (MQ=0)
                                 CCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCC   >  1:1177736/1‑101 (MQ=2)
                                  CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCc  <  1:281940/101‑2 (MQ=1)
                                  CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCc  <  1:2452113/101‑2 (MQ=11)
                                  CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCc  <  2:991756/101‑2 (MQ=11)
                                                                                                                                       
ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC..................................  <  NC_014034/222053‑221953
...................................................................................................ACGGATCCGACCGATCCCACGGACCCGACGGACCCG  <  NC_014034/222105‑222072

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 22 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG