New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221953 =229 (1.100)34 (0.160) 9/196 26.0 0.11 coding (704/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222123 298 (1.410)coding (534/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC....................................................................................................  <  NC_014034/222053‑221953
...................................................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACG  <  NC_014034/222123‑222024
                                                                                                                                                                                                         
 CCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACG                                                                                                     <  1:3582881/101‑1 (MQ=0)
     cCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACC                                                                                                 <  2:1763729/100‑1 (MQ=9)
      CCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCC                                                                                                <  1:808528/101‑1 (MQ=0)
       cgACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCG                                                                                               >  2:2357379/3‑101 (MQ=12)
         acggccCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGAC                                                                                             <  1:577457/95‑1 (MQ=0)
          ccgacCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACC                                                                                            <  1:1294404/96‑1 (MQ=2)
            gccCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGA                                                                                          <  1:569007/98‑1 (MQ=0)
            gacCCGACCGCTCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGA                                                                                          <  2:2053664/98‑1 (MQ=0)
            gacCCGACCGATCCCACGGACCCGACCGATCCCACGGGCCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGA                                                                                          <  2:499792/98‑1 (MQ=0)
            gacCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGc                                                                                          >  2:3915080/4‑100 (MQ=2)
            gacCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGCCGGACCCGACCGA                                                                                          >  2:1140043/4‑101 (MQ=0)
             accccACCGATCCCACGGACCCGACCGGTCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGAT                                                                                         <  2:3549605/96‑1 (MQ=0)
               cccACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCC                                                                                       <  1:526824/98‑1 (MQ=0)
                CGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGAGCCGACCGATCCg                                                                                      >  2:2772172/1‑100 (MQ=12)
                 GACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCA                                                                                     >  2:1294308/1‑101 (MQ=0)
                 GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGCCCCGACCGATCCGACGGACCCGACCGCTCCCc                                                                                     >  1:1761330/1‑100 (MQ=0)
                     gacCCCACGGCCCCGACCGATCCCACGGATCCCACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGA                                                                                 <  1:2354819/98‑1 (MQ=0)
                      ATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGaac                                                                                >  2:2249804/1‑98 (MQ=0)
                        CCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCC                                                                              <  2:3206853/101‑1 (MQ=12)
                        CCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCC                                                                              >  1:1294453/1‑101 (MQ=12)
                        CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCCCGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCC                                                                              <  1:771987/101‑1 (MQ=12)
                        CCCACGGACCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCC                                                                              <  2:1707676/101‑1 (MQ=12)
                         CCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG                                                                             <  2:2540169/101‑1 (MQ=12)
                         CCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG                                                                             >  1:1359078/1‑101 (MQ=12)
                         CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGACCCCACGGACCCG                                                                             >  1:2918082/1‑101 (MQ=9)
                          CACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGA                                                                            >  1:2246553/1‑101 (MQ=12)
                            CGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACg                                                                          >  1:3851333/1‑100 (MQ=9)
                            CGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACg                                                                          >  1:2697901/1‑100 (MQ=9)
                            CGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACCGACCCGACC                                                                          >  1:1021694/1‑101 (MQ=9)
                             GGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACgg                                                                         >  1:528071/1‑99 (MQ=2)
                             GGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACgg                                                                         <  1:3273057/101‑3 (MQ=2)
                             GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGACCCCACGGACCCGACCG                                                                         >  1:2988222/1‑101 (MQ=9)
                                                   CCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC                                                   <  1:812182/101‑1 (MQ=0)
                                                        CGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACGGACCCGACgg                                              >  2:1626253/1‑99 (MQ=0)
                                                                                                                                                                                                         
ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC....................................................................................................  <  NC_014034/222053‑221953
...................................................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACG  <  NC_014034/222123‑222024

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG