New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221956 =232 (1.350)67 (0.390) 17/162 17.9 0.18 coding (701/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222080 387 (1.830)coding (577/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC....................................................................................................................  <  NC_014034/222029‑221956
.............................................................................................ACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACC  <  NC_014034/222080‑221984
                                                                          |||||||||||||||||||                                                                                                 
CCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCC                                                                                           <  1:808528/101‑1 (MQ=0)
CCCACGGTCCCGCCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCC                                                                                           <  2:1696276/101‑1 (MQ=0)
CCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCC                                                                                           >  1:3001785/1‑101 (MQ=0)
CCCACGGAGCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCC                                                                                           <  2:2312751/101‑1 (MQ=0)
CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCC                                                                                           <  1:3397755/101‑1 (MQ=0)
CCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCC                                                                                           <  2:3206853/101‑1 (MQ=12)
CCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCC                                                                                           >  1:1294453/1‑101 (MQ=12)
CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACGGATCCCACGGACCCGACCGATCCCATGGACCC                                                                                           >  2:919437/1‑101 (MQ=0)
CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACGGATCGCACGGACac                                                                                           >  2:3506939/1‑99 (MQ=0)
CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCTAGCCCACGGACCg                                                                                           >  1:1035237/1‑100 (MQ=0)
 CCACGGATCCGACCTATCCCACGGATCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCG                                                                                          <  2:3939404/101‑1 (MQ=0)
 CCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCG                                                                                          >  2:3833427/1‑101 (MQ=0)
 CCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCG                                                                                          <  1:2913632/101‑1 (MQ=0)
 CCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG                                                                                          >  1:1359078/1‑101 (MQ=12)
 CCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG                                                                                          <  2:2540169/101‑1 (MQ=12)
 CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGACCCCACGGACCCc                                                                                          >  1:3483417/1‑100 (MQ=0)
  CACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGA                                                                                         <  1:3929155/101‑1 (MQ=0)
  CACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGA                                                                                         >  1:2246553/1‑101 (MQ=12)
   cCGGCCCCGACCGATCCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGAC                                                                                        <  2:2198385/100‑1 (MQ=0)
   ACGGCCCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGAC                                                                                        <  1:577457/101‑1 (MQ=0)
   ACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGAC                                                                                        >  1:4213527/1‑101 (MQ=0)
   ACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGAC                                                                                        <  1:3716526/101‑1 (MQ=0)
   ACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGAC                                                                                        <  1:1015608/101‑1 (MQ=0)
   ACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGAC                                                                                        <  1:1045134/101‑1 (MQ=0)
   ACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCCCGGACCCGACCAATCCCACGGACCCGAC                                                                                        >  1:722344/1‑101 (MQ=2)
    CGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACC                                                                                       <  2:2111884/101‑1 (MQ=0)
    CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACC                                                                                       <  1:2302474/101‑1 (MQ=0)
    CGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACg                                                                                       >  1:3851333/1‑100 (MQ=9)
    CGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACg                                                                                       >  1:2697901/1‑100 (MQ=9)
     GGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCG                                                                                      >  1:1132639/1‑101 (MQ=0)
     GGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCG                                                                                      >  1:4232605/1‑101 (MQ=0)
     GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCG                                                                                      >  1:1207568/1‑101 (MQ=0)
     GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCG                                                                                      >  2:2475474/1‑101 (MQ=0)
     GGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACgg                                                                                      <  1:3273057/101‑3 (MQ=2)
     GGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACgg                                                                                      >  1:528071/1‑99 (MQ=2)
     GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGCTCCCACGGACCCGACCGATCCCACGCACCCGACCG                                                                                      >  2:1765710/1‑101 (MQ=0)
     GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCCCGGACCCGACCCATCCCACGGACCCGACCG                                                                                      >  1:879415/1‑101 (MQ=0)
     GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGCCCGAACCCACGGACCCGACCG                                                                                      >  2:125120/1‑101 (MQ=0)
      gatCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGA                                                                                     >  2:2200306/4‑101 (MQ=0)
      gatCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGA                                                                                     <  2:1785381/98‑1 (MQ=0)
      gatCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGA                                                                                     >  1:635830/4‑101 (MQ=0)
      GACCCGACCGACCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGA                                                                                     <  1:3818718/101‑1 (MQ=0)
       atCCGCCCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGAT                                                                                    <  2:3880583/99‑1 (MQ=0)
       atCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGCCCGATCCCACGGACCCGACCGAT                                                                                    >  2:3537223/3‑101 (MQ=0)
       atCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGAc                                                                                    >  2:2304295/3‑100 (MQ=0)
        tCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGAcc                                                                                   >  1:3148084/2‑99 (MQ=0)
        CCCGACCGATCCCACGGATCCCACCGATCCCACGGACCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATC                                                                                   <  1:462061/101‑1 (MQ=0)
         CCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGCCCGATCCCCCGGCCCCGACCGATCC                                                                                  >  1:4076740/1‑101 (MQ=0)
          CGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGANCCGACCGATCCCACGGACCCGACCGATCCc                                                                                 >  1:1965616/1‑100 (MQ=2)
          CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGAGCCGACCGATCCCACGGAGCCGACCGATCCCACGGACCCGACCGACCCa                                                                                 >  2:3549721/1‑100 (MQ=0)
                 cCCCACGGACCCGCCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCTACGGACC                                                                          <  2:2722303/100‑1 (MQ=12)
                        gacCCGACCGCTCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGA                                                                   <  2:2053664/98‑1 (MQ=0)
                        gacCCGACCGATCCCACGGACCCGACCGATCCCACGGGCCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGA                                                                   <  2:499792/98‑1 (MQ=0)
                        gacCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGCCGGACCCGACCGA                                                                   >  2:1140043/4‑101 (MQ=0)
                         accccACCGATCCCACGGACCCGACCGGTCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGAT                                                                  <  2:3549605/96‑1 (MQ=0)
                            CGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGAGCCGACCGATCCg                                                               >  2:2772172/1‑100 (MQ=12)
                             GACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCA                                                              >  2:1294308/1‑101 (MQ=0)
                             GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGCCCCGACCGATCCGACGGACCCGACCGCTCCCc                                                              >  1:1761330/1‑100 (MQ=0)
                                    CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCCCGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCC                                                       <  1:771987/101‑1 (MQ=12)
                                    CCCACGGACCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCC                                                       <  2:1707676/101‑1 (MQ=12)
                                     CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGACCCCACGGACCCG                                                      >  1:2918082/1‑101 (MQ=9)
                                        CGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACCGACCCGACC                                                   >  1:1021694/1‑101 (MQ=9)
                                         GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGACCCCACGGACCCGACCG                                                  >  1:2988222/1‑101 (MQ=9)
                                                ACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC                                           <  1:1482764/101‑1 (MQ=9)
                                                             gCCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGAT                              <  2:2314216/100‑1 (MQ=12)
                                                                     GATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA                      <  1:4023445/101‑1 (MQ=12)
                                                                         CCACGGACCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCG                  <  1:3141831/101‑1 (MQ=12)
                                                                           cCGGACCCGACCGATCCCACGCACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGAC                <  2:1560901/100‑1 (MQ=0)
                                                                           ACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGAC                <  1:2249963/101‑1 (MQ=0)
                                                                            CGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACC               <  2:2642904/101‑1 (MQ=0)
                                                                            CGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACC               <  2:1152361/101‑1 (MQ=0)
                                                                             GGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCG              <  1:3575262/101‑1 (MQ=0)
                                                                             GGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCG              <  2:1900735/101‑1 (MQ=0)
                                                                                 CCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCC          <  2:661234/101‑1 (MQ=0)
                                                                                 CCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCC          <  1:55848/101‑1 (MQ=0)
                                                                                  CGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCC         >  1:4227553/1‑101 (MQ=0)
                                                                                  CGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCC         <  2:2149682/101‑1 (MQ=0)
                                                                                  CGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCC         <  2:2528234/101‑1 (MQ=0)
                                                                                   GACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCA        >  2:577397/1‑101 (MQ=0)
                                                                                   GACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCA        <  1:1054679/101‑1 (MQ=0)
                                                                                   GACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCA        <  2:1957752/101‑1 (MQ=0)
                                                                                       GATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA    >  2:1434519/1‑101 (MQ=0)
                                                                                       GATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA    >  2:2053777/1‑101 (MQ=0)
                                                                                        ATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAt   >  1:1852577/1‑100 (MQ=0)
                                                                                         TCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAtc  <  2:1441578/101‑3 (MQ=0)
                                                                          |||||||||||||||||||                                                                                                 
CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC....................................................................................................................  <  NC_014034/222029‑221956
.............................................................................................ACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACC  <  NC_014034/222080‑221984

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 22 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG