New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221956 =231 (1.350)14 (0.080) 5/162 26.2 0.05 coding (701/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222107 260 (1.230)coding (550/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

CGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC......................................................  <  NC_014034/222033‑221956
.................................................................................................ACGGATCCGACCGATCCCACGGACCCGACGGACCC  <  NC_014034/222107‑222073
                                                                              |||||||||||||||||||                                   
cgtTCCCACGGCCCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGG                                 <  2:2565599/98‑1 (MQ=255)
    CCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCC                             <  1:808528/101‑1 (MQ=0)
       ACGGCCCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGAC                          <  1:577457/101‑1 (MQ=0)
          GACCCGACCGCTCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGA                       <  2:2053664/101‑1 (MQ=0)
          GACCCGACCGATCCCACGGACCCGACCGATCCCACGGGCCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGA                       <  2:499792/101‑1 (MQ=0)
          GACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGCCGGACCCGACCGA                       >  2:1140043/1‑101 (MQ=0)
              CGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGAGCCGACCGATCCg                   >  2:2772172/1‑100 (MQ=12)
                      CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCCCGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCC           <  1:771987/101‑1 (MQ=12)
                      CCCACGGACCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCC           <  2:1707676/101‑1 (MQ=12)
                       CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGACCCCACGGACCCG          >  1:2918082/1‑101 (MQ=9)
                          CGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACCGACCCGACc       >  1:1021694/1‑100 (MQ=9)
                           GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGAGCCGACCGATCCCAAGGACCCGACag      >  2:277768/1‑99 (MQ=0)
                           GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGACCCCACGGACCCGACcg      >  1:2988222/1‑99 (MQ=9)
                              cCCGACCGATCCCACGGACCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACC   <  1:2578970/100‑1 (MQ=12)
                               CCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC  <  1:812182/101‑1 (MQ=0)
                                                                              |||||||||||||||||||                                   
CGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC......................................................  <  NC_014034/222033‑221956
.................................................................................................ACGGATCCGACCGATCCCACGGACCCGACGGACCC  <  NC_014034/222107‑222073

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 30 ≤  ATCG  < 40 ≤  ATCG