New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221959 =367 (1.730)36 (0.170) 6/200 28.7 0.11 coding (698/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222129 235 (1.110)coding (528/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

CCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGA.........................................................  <  NC_014034/222057‑221959
...................................................................................................CCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCC  <  NC_014034/222129‑222073
                                                                                                                                                            
tCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACC                                                         >  1:3148084/2‑101 (MQ=0)
  CGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCC                                                       >  1:1767007/1‑101 (MQ=0)
  CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCC                                                       <  2:991756/101‑1 (MQ=11)
  CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCC                                                       <  1:2452113/101‑1 (MQ=11)
  CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCC                                                       <  1:281940/101‑1 (MQ=1)
  CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGAGCCGACCGATCCCACGGAGCCGACCGATCCCACGGACCCGACCGACCCa                                                       >  2:3549721/1‑100 (MQ=0)
   GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCA                                                      <  2:2415949/101‑1 (MQ=14)
   GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGACCCCACGGATCCGACCGACCCCc                                                      >  1:2209968/1‑100 (MQ=0)
    ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCAC                                                     <  1:3003182/101‑1 (MQ=17)
     CCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACG                                                    <  2:3759518/101‑1 (MQ=14)
     CCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACG                                                    <  1:853893/101‑1 (MQ=17)
      CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGG                                                   >  2:3743156/1‑101 (MQ=17)
      CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGG                                                   >  1:4071415/1‑101 (MQ=17)
       GATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGGA                                                  >  2:3779644/1‑101 (MQ=0)
       GATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGA                                                  >  1:1105528/1‑101 (MQ=17)
       GATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGA                                                  >  1:1770014/1‑101 (MQ=17)
        ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAC                                                 >  1:2248708/1‑101 (MQ=17)
        ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAC                                                 <  1:2328100/101‑1 (MQ=18)
        ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAC                                                 <  2:1414501/101‑1 (MQ=18)
         TCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACC                                                <  1:3694619/101‑1 (MQ=18)
          CCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCC                                               <  2:3783059/101‑1 (MQ=18)
          CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCCACGGACCC                                               >  1:1696391/1‑101 (MQ=0)
           CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGACCCCACGGACCCG                                              >  1:2918082/1‑101 (MQ=9)
             ACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGAC                                            <  2:1945991/101‑1 (MQ=18)
             ACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGAC                                            <  2:1426377/101‑1 (MQ=17)
              CGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACC                                           >  2:3867052/1‑101 (MQ=17)
              CGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACC                                           <  2:640997/101‑1 (MQ=18)
               GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCG                                          >  2:2700304/1‑101 (MQ=17)
               GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCG                                          >  1:307758/1‑101 (MQ=17)
               GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGACCCCACGGACCCGACCG                                          >  1:2988222/1‑101 (MQ=9)
                 ATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGAc                                        >  1:3526909/1‑100 (MQ=17)
                   CCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGATCC                                      >  2:2909522/1‑101 (MQ=255)
                     GACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGGACCCCACAGACCCCc                                    >  1:902114/1‑100 (MQ=2)
                             CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGACCCCACGGACCCc                            >  1:3483417/1‑100 (MQ=0)
                                  GACCCGACCGACCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGA                       <  1:3818718/101‑1 (MQ=0)
                                                       CCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC  <  1:812182/101‑1 (MQ=0)
                                                                                                                                                            
CCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGA.........................................................  <  NC_014034/222057‑221959
...................................................................................................CCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCC  <  NC_014034/222129‑222073

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 41 ≤  ATCG