New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	221962 =	452 (2.290)	60 (0.300)	6/186	27.6	0.10	coding (695/2748 nt)	RCAP_rcc00185	hypothetical protein
	?	NC_014034	= 222062	669 (3.160)					coding (595/2748 nt)	RCAP_rcc00185	hypothetical protein
Rejected: Position hash score below cutoff.

GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGAC...................................................................................................  <  NC_014034/222060‑221962 ..........................................................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCAC  <  NC_014034/222062‑221971                                                                                                    |||||||                                                                                             GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCCCGGACCCGCCCGATCCCACGGACCCGACGG                                                                                                   >  1:6234/1‑101 (MQ=0)  GACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAGGGATCCGACGGA                                                                                                  >  2:1776942/1‑101 (MQ=0)   ACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCCCGGATCCGACCGATCCCACGGATCCGACGGcc                                                                                                 >  2:2277375/1‑99 (MQ=0)     CCGACCGATCCCACGGATCCGTCCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC                                                                                               <  1:2992/101‑1 (MQ=0)      CGACCGATCCCACGGATCCGACCGATNNNANGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCC                                                                                              <  1:2271895/101‑1 (MQ=2)      CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCC                                                                                              <  1:281940/101‑1 (MQ=1)      CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCC                                                                                              <  1:2452113/101‑1 (MQ=11)      CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCC                                                                                              <  2:991756/101‑1 (MQ=11)      CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGAGCCGACCGATCCCACGGAGCCGACCGATCCCACGGACCCGACCGACCCa                                                                                              >  2:3549721/1‑100 (MQ=0)       GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCA                                                                                             <  2:2415949/101‑1 (MQ=14)        ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCAC                                                                                            <  1:3003182/101‑1 (MQ=17)        ACCGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCAC                                                                                            <  2:749689/101‑1 (MQ=12)         CCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACG                                                                                           <  1:853893/101‑1 (MQ=17)         CCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACG                                                                                           <  2:3759518/101‑1 (MQ=14)          CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGG                                                                                          >  1:4071415/1‑101 (MQ=17)          CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGG                                                                                          >  2:3743156/1‑101 (MQ=17)           GATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGA                                                                                         >  1:1105528/1‑101 (MQ=17)           GATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGA                                                                                         >  1:1770014/1‑101 (MQ=17)            ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAC                                                                                        <  2:1414501/101‑1 (MQ=18)            ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAC                                                                                        >  1:2248708/1‑101 (MQ=17)            ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAC                                                                                        <  1:2328100/101‑1 (MQ=18)             TCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACC                                                                                       <  1:3694619/101‑1 (MQ=18)              CCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCC                                                                                      <  2:3783059/101‑1 (MQ=18)              CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCCACGGACCC                                                                                      >  1:1696391/1‑101 (MQ=0)                ccCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGA                                                                                    <  1:2609968/99‑1 (MQ=12)                 ACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGAC                                                                                   <  2:1945991/101‑1 (MQ=18)                 ACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGAC                                                                                   <  2:1426377/101‑1 (MQ=17)                  CGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACC                                                                                  <  2:640997/101‑1 (MQ=18)                  CGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACC                                                                                  >  2:3867052/1‑101 (MQ=17)                   GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCG                                                                                 >  1:307758/1‑101 (MQ=17)                   GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCG                                                                                 >  2:2700304/1‑101 (MQ=17)                    GATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGCCCCCACGGACCCGACCGA                                                                                >  1:2033180/1‑101 (MQ=12)                     ATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGAc                                                                               >  1:3526909/1‑100 (MQ=17)                      cCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAGCCGACGGACCCCACGGACCCGACCGCTC                                                                              >  2:3003489/2‑101 (MQ=0)                       CCGACCGATCCCACGGGCCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCC                                                                             <  1:3776711/101‑1 (MQ=12)                         GACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAGCCGACCGATCCCA                                                                           >  2:259861/1‑101 (MQ=12)                          gCCGATCCCACGGACCCGTCCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCAC                                                                          <  2:2800112/100‑1 (MQ=12)                             GATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGCCCGATCCCACGca                                                                       >  1:2023673/1‑99 (MQ=12)                              ATCCCCCGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGAc                                                                      <  1:1055777/101‑2 (MQ=9)                               TCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATACCACGGAcc                                                                     >  2:3427276/1‑99 (MQ=2)                                CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCCACGGACCCGACCGACCCCACGGACCC                                                                    >  1:1848018/1‑101 (MQ=12)                                   cCGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGAC                                                                 <  2:4071154/100‑1 (MQ=0)                                   ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGAC                                                                 >  2:44336/1‑101 (MQ=0)                                    CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACC                                                                >  1:2710253/1‑101 (MQ=0)                                    CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACC                                                                <  1:3492437/101‑1 (MQ=0)                                    CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACC                                                                <  1:3743410/101‑1 (MQ=0)                                     GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCt                                                               >  2:2589841/1‑100 (MQ=0)                                     GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCG                                                               <  2:2023535/101‑1 (MQ=0)                                     GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCG                                                               >  2:3716272/1‑101 (MQ=0)                                      GACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGA                                                              <  1:34345/101‑1 (MQ=0)                                       ACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGAT                                                             >  2:1588389/1‑101 (MQ=0)                                       ACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGAT                                                             >  2:2266220/1‑101 (MQ=0)                                        CCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATC                                                            >  2:2499836/1‑101 (MQ=0)                                           GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCc                                                         >  1:499849/1‑100 (MQ=12)                                                          cCCGACCGATCCCACGGATCCCACCGATCCCACGGACCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATC                                          <  1:462061/100‑1 (MQ=0)                                                            CGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGANCCGACCGATCCCACGGACCCGACCGATCCC                                        >  1:1965616/1‑101 (MQ=2)                                                                                  CGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGa                  >  2:1031411/1‑100 (MQ=2)                                                                                   ggcCCCGCGGACCCGACGGACCCCACGGGCCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGA                 <  2:2968470/98‑1 (MQ=255)                                                                                   GATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGc                 >  1:341609/1‑100 (MQ=2)                                                                                     TCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAtc               >  1:1920778/1‑99 (MQ=0)                                                                                              tCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGCCCCGACCGATC      >  1:1371767/2‑101 (MQ=255)                                                                                               CCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGACCC     >  2:776309/1‑101 (MQ=0)                                                                                               CCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACACGACCGATac     >  2:808450/1‑99 (MQ=255)                                                                                                 GACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCA   >  2:1294308/1‑101 (MQ=0)                                                                                                 GACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACGCGACCGATCCCc   >  2:437879/1‑100 (MQ=2)                                                                                                 GACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGAgcgga   >  2:3987657/1‑96 (MQ=255)                                                                                                 GACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGAACCCA   >  2:3340822/1‑101 (MQ=2)                                                                                                  ACGGACCCCACGGACCCGACCGATCCCACGGACCCGCCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCAC  <  2:253771/101‑1 (MQ=0)                                                                                                  ACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGCCCGATCCCACGGACCCGACCGATCCCAC  >  1:3861088/1‑101 (MQ=0)                                                                                                    |||||||                                                                                             GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGAC...................................................................................................  <  NC_014034/222060‑221962 ..........................................................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCAC  <  NC_014034/222062‑221971 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG