New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221968 =584 (3.680)52 (0.330) 4/150 25.9 0.12 coding (689/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222113 189 (0.890)coding (544/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

ATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGA..............................................................  <  NC_014034/222067‑221968
.............................................................................................................................GATCCCACGGATCCGACCGATCCCACGGACCCGACGG  <  NC_014034/222113‑222077
                                                                                                    |||||||||||||||||||||||||                                     
ATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAT                                                               >  1:1852577/1‑101 (MQ=0)
 TCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATC                                                              <  2:1441578/101‑1 (MQ=0)
 TCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATC                                                              >  2:3853742/1‑101 (MQ=0)
  CCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC                                                             <  1:2623650/101‑1 (MQ=0)
  CCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC                                                             >  1:554969/1‑101 (MQ=0)
   CTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCG                                                            <  2:2203993/101‑1 (MQ=0)
    TACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGA                                                           >  2:458580/1‑101 (MQ=0)
          CCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATC                                                     >  1:1397923/1‑101 (MQ=0)
           CCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCC                                                    <  2:3540326/101‑1 (MQ=0)
            CGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCC                                                   <  2:554905/101‑1 (MQ=0)
            CGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCC                                                   <  2:3543600/101‑1 (MQ=0)
            CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCC                                                   <  1:2452113/101‑1 (MQ=11)
             GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCA                                                  <  2:2415949/101‑1 (MQ=14)
             GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGACCCCACGGATCCGACCGACCCCc                                                  >  1:2209968/1‑100 (MQ=0)
              ACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGCCGGATCCCAC                                                 >  2:3094508/1‑101 (MQ=0)
              ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCAC                                                 <  1:3003182/101‑1 (MQ=17)
               CCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACG                                                <  2:3759518/101‑1 (MQ=14)
               CCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACG                                                <  1:853893/101‑1 (MQ=17)
                CGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGG                                               <  2:1852457/101‑1 (MQ=0)
                CGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGG                                               <  2:292743/101‑1 (MQ=0)
                 GATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGA                                              >  1:1770014/1‑101 (MQ=17)
                 GATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGA                                              >  1:1105528/1‑101 (MQ=17)
                  ATCCCCCGGCTCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGAc                                             <  2:3147853/101‑2 (MQ=0)
                            cCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGAAACCACGGAGCCGACGGATa                                   >  2:2018861/2‑100 (MQ=0)
                             CCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC                                  <  1:812182/101‑1 (MQ=0)
                                     TCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAcc                          <  2:2593661/101‑3 (MQ=2)
                                       CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCG                        <  1:2552420/101‑1 (MQ=0)
                                          CGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACC                     >  2:2121024/1‑101 (MQ=2)
                                           GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCG                    >  1:2268011/1‑101 (MQ=2)
                                           GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCG                    >  1:2112022/1‑101 (MQ=2)
                                            GACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAGGGATCCGACGGA                   >  2:1776942/1‑101 (MQ=0)
                                            GACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGA                   >  2:1681962/1‑101 (MQ=2)
                                             ACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCCCGGATCCGACCGATCCCACGGATCCGACggcc                  >  2:2277375/1‑97 (MQ=0)
                                                CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCC               <  2:991756/101‑1 (MQ=11)
                                                CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCC               <  1:281940/101‑1 (MQ=1)
                                                  ACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC             <  1:123429/101‑1 (MQ=0)
                                                  ACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC             >  1:2060527/1‑101 (MQ=0)
                                                   CCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACG            >  2:3968995/1‑101 (MQ=0)
                                                   CCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACG            <  1:659424/101‑1 (MQ=0)
                                                   CCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACG            <  1:458637/101‑1 (MQ=0)
                                                    CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGG           >  1:4071415/1‑101 (MQ=17)
                                                    CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGG           >  2:3743156/1‑101 (MQ=17)
                                                      ATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAC         >  1:2425723/1‑101 (MQ=2)
                                                      ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAC         >  1:2248708/1‑101 (MQ=17)
                                                      ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAC         <  1:2328100/101‑1 (MQ=18)
                                                      ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAC         <  2:1414501/101‑1 (MQ=18)
                                                       TCCGACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACC        >  2:3583837/1‑101 (MQ=12)
                                                       TCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACC        <  1:3694619/101‑1 (MQ=18)
                                                       TCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGAGCCCACGGAACCGACCGATCCCACGGACC        >  2:3616844/1‑101 (MQ=255)
                                                        cctACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC       >  1:3002407/4‑101 (MQ=12)
                                                        cctACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC       <  2:4227291/98‑1 (MQ=12)
                                                        CCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCC       <  2:3783059/101‑1 (MQ=18)
                                                        CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCC       >  1:2480104/1‑101 (MQ=0)
                                                        CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCC       <  1:1519752/101‑1 (MQ=0)
                                                        CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCC       <  2:1869665/101‑1 (MQ=0)
                                                         ctACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCc      >  1:1512622/3‑100 (MQ=12)
                                                         ctACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCG      >  2:70548/3‑101 (MQ=17)
                                                         ctACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCG      >  1:1965575/3‑101 (MQ=17)
                                                         ctACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCG      <  2:3321290/99‑1 (MQ=17)
                                                         CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCa      >  1:4058902/1‑100 (MQ=2)
                                                         CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCG      <  1:1334645/101‑1 (MQ=0)
                                                         CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCG      <  1:3421742/101‑1 (MQ=0)
                                                          tACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGA     >  2:4025036/2‑101 (MQ=17)
                                                          CACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGA     <  2:3505440/101‑1 (MQ=0)
                                                           ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGAC    >  1:3863399/1‑101 (MQ=17)
                                                           ACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGAC    <  2:1426377/101‑1 (MQ=17)
                                                            CGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACc   >  2:2222798/1‑100 (MQ=14)
                                                            CGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACc   >  2:3867052/1‑100 (MQ=17)
                                                            CGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACc   <  2:1327036/101‑2 (MQ=0)
                                                             GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACcg  >  2:3148329/1‑99 (MQ=11)
                                                             GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACcg  >  1:307758/1‑99 (MQ=17)
                                                             GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACcg  >  2:2700304/1‑99 (MQ=17)
                                                             GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACcg  >  1:1707791/1‑99 (MQ=0)
                                                             GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACcg  >  1:3976791/1‑99 (MQ=0)
                                                             GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACcg  >  2:3628463/1‑99 (MQ=0)
                                                                                                    |||||||||||||||||||||||||                                     
ATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGA..............................................................  <  NC_014034/222067‑221968
.............................................................................................................................GATCCCACGGATCCGACCGATCCCACGGACCCGACGG  <  NC_014034/222113‑222077

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG