New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221968 =607 (3.290)30 (0.160) 6/174 26.5 0.07 coding (689/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222125 216 (1.020)coding (532/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

ATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGA..........................................................  <  NC_014034/222067‑221968
.................................................................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCG  <  NC_014034/222125‑222081
                                                                                                    |||||||||||||                                             
ATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAT                                                           >  1:1852577/1‑101 (MQ=0)
 TCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATC                                                          >  2:3853742/1‑101 (MQ=0)
 TCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATC                                                          <  2:1441578/101‑1 (MQ=0)
  CCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC                                                         >  1:554969/1‑101 (MQ=0)
  CCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC                                                         <  1:2623650/101‑1 (MQ=0)
   CTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCg                                                        <  2:2203993/101‑2 (MQ=0)
               CCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACG                                            <  2:2122250/101‑1 (MQ=0)
                CGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGG                                           <  1:40378/101‑1 (MQ=0)
                CGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGG                                           >  1:817489/1‑101 (MQ=2)
                CGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGG                                           >  1:2928699/1‑101 (MQ=2)
                CGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGG                                           <  1:2304463/101‑1 (MQ=2)
                CGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGG                                           >  2:2477945/1‑101 (MQ=2)
                    CCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCC                                       <  1:1599752/101‑1 (MQ=12)
                    CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCC                                       <  1:3537476/101‑1 (MQ=2)
                        CGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACC                                   <  1:2961070/101‑1 (MQ=9)
                        CGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACC                                   >  1:599661/1‑101 (MQ=0)
                        CGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACC                                   >  1:358060/1‑101 (MQ=0)
                         ggccCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCG                                  <  1:441370/97‑1 (MQ=2)
                          gacCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGA                                 <  1:67467/98‑1 (MQ=12)
                           acCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGAc                                >  1:227749/3‑100 (MQ=2)
                              CGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCCACCGATCCC                             >  1:1943345/1‑101 (MQ=2)
                               GACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCCATCCCA                            >  2:3070975/1‑101 (MQ=2)
                                ACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGCTCCCAC                           >  2:317248/1‑101 (MQ=2)
                                   GATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGAGCCGACGGACCCGACCGATCCCACGGA                        >  1:334984/1‑101 (MQ=0)
                                   GATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCAACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGA                        >  1:3524097/1‑101 (MQ=2)
                                    ATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCTCACGGAc                       >  1:1679235/1‑100 (MQ=0)
                                      CCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCC                     >  2:853433/1‑101 (MQ=2)
                                       CCACGGACCCGACCGATCCAACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCG                    <  1:245399/101‑1 (MQ=0)
                                           GGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCG                >  2:1071376/1‑101 (MQ=2)
                                              CCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATC             <  1:3473768/101‑1 (MQ=9)
                                              CCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATC             >  2:705750/1‑101 (MQ=12)
                                              CCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATC             <  1:3893164/101‑1 (MQ=9)
                                                CGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCg           >  1:44538/1‑100 (MQ=16)
                                                     GATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGA      >  1:2934253/1‑101 (MQ=12)
                                                       cCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACC    <  2:1763729/100‑1 (MQ=9)
                                                         cgACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCG  >  2:2357379/3‑101 (MQ=12)
                                                                                                    |||||||||||||                                             
ATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGA..........................................................  <  NC_014034/222067‑221968
.................................................................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCG  <  NC_014034/222125‑222081

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 41 ≤  ATCG