New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 222040 =866 (5.050)32 (0.190) 9/162 22.9 0.05 coding (617/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222101 290 (1.370)coding (556/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

ATCCCACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGA.......................................................................................................................  <  NC_014034/222139‑222040
.......................................................................................................................CCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATC  <  NC_014034/222101‑222002
                                                                                                    |||||||||||||||||||                                                                                                    
ATCCCACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGAC                                                                                                                        >  1:1288959/1‑101 (MQ=11)
 cCCCACCAGCCCCACGGACCCGACCGATCCCCCGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACC                                                                                                                       <  1:1870810/100‑1 (MQ=14)
 TCCCACCAGCCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACC                                                                                                                       <  2:1912461/101‑1 (MQ=14)
 TCCCACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACC                                                                                                                       <  2:2934183/101‑1 (MQ=31)
  CCCACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCC                                                                                                                      >  1:3955263/1‑101 (MQ=32)
   cccCCAGCCCCACGGACCCGACCGACCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCG                                                                                                                     <  1:1846553/98‑1 (MQ=12)
     cCCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGAC                                                                                                                   <  2:3442385/100‑1 (MQ=17)
     ACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGAC                                                                                                                   >  1:2229170/1‑101 (MQ=32)
      CCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACC                                                                                                                  <  1:3508511/101‑1 (MQ=33)
      CCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACC                                                                                                                  <  1:1014580/101‑1 (MQ=33)
       ccGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCG                                                                                                                 <  1:573024/99‑1 (MQ=17)
       CAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCG                                                                                                                 <  1:502607/101‑1 (MQ=33)
       CAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCG                                                                                                                 <  1:2053752/101‑1 (MQ=33)
          CCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATC                                                                                                              <  1:2909225/101‑1 (MQ=32)
          CCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCCATC                                                                                                              >  2:2188500/1‑101 (MQ=17)
          CCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGAACCGACCGgta                                                                                                              >  2:3718408/1‑98 (MQ=0)
           CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGCCCCGACCGATCCCACGGACCCGACCGATCC                                                                                                             >  1:3215617/1‑101 (MQ=17)
           CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCC                                                                                                             <  1:1537694/101‑1 (MQ=32)
           CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCC                                                                                                             <  1:2516790/101‑1 (MQ=32)
            CCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGCCCCGACCGATCCCACGGACCCGACCGATCCC                                                                                                            >  2:1975544/1‑101 (MQ=17)
            CCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCCCGGACCCGCCCGATCCC                                                                                                            >  1:2888559/1‑101 (MQ=12)
            CCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCC                                                                                                            >  1:3494137/1‑101 (MQ=32)
            CCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCC                                                                                                            <  2:650021/101‑1 (MQ=32)
             CACGGCCCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCA                                                                                                           <  2:781548/101‑1 (MQ=18)
             CACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCTACCGACCCCA                                                                                                           >  1:3921363/1‑101 (MQ=12)
             CACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCA                                                                                                           <  2:1236862/101‑1 (MQ=33)
              ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCAC                                                                                                          >  1:1878848/1‑101 (MQ=32)
               CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGCACCCACG                                                                                                         >  2:3563930/1‑101 (MQ=12)
               CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACG                                                                                                         <  2:2752635/101‑1 (MQ=32)
               CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACG                                                                                                         <  1:1488433/101‑1 (MQ=33)
                GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGG                                                                                                        >  2:3408783/1‑101 (MQ=32)
                GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACCGACCCGACCGATCCCACGGACCCGACCGAGCCCACGc                                                                                                        >  2:1521221/1‑100 (MQ=12)
                GGACCCGACCGACCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGG                                                                                                        <  2:2920537/101‑1 (MQ=18)
                   CCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACC                                                                                                     <  2:2630095/101‑1 (MQ=33)
                    CCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCC                                                                                                    <  2:3753978/101‑1 (MQ=33)
                     CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGCCCCc                                                                                                   >  1:1174617/1‑100 (MQ=14)
                     CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCc                                                                                                   <  1:4161582/101‑2 (MQ=17)
                      GACCGATCCCACGGATCCGACCGATCCCACGGCCCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCca                                                                                                  <  2:4160559/101‑3 (MQ=14)
                      GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCca                                                                                                  <  2:2119791/101‑3 (MQ=14)
                      GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGACCCGACGGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCca                                                                                                  >  2:3694365/1‑99 (MQ=255)
                       gCCGATCCCACGGATCCGACCGATCCCACGGCCCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCAC                                                                                                 <  2:869231/100‑1 (MQ=2)
                       ACCGATCCCGCGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCAC                                                                                                 <  1:414267/101‑1 (MQ=2)
                       ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCAC                                                                                                 <  1:491470/101‑1 (MQ=11)
                        CCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACg                                                                                                <  1:1673797/101‑2 (MQ=1)
                         CGATCCCACGGATCCGACCGATCCCACGGGCCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACgg                                                                                               <  2:2492135/101‑3 (MQ=0)
                          GATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGCTCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGA                                                                                              >  2:3655727/1‑101 (MQ=0)
                          GATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGA                                                                                              <  1:3344689/101‑1 (MQ=1)
                           ATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGAT                                                                                             >  1:1879006/1‑101 (MQ=11)
                           ATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGAT                                                                                             <  2:1259010/101‑1 (MQ=11)
                            TCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATC                                                                                            <  1:2435017/101‑1 (MQ=14)
                             CCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCCCGGCCCCGACCGATCC                                                                                           >  1:140812/1‑101 (MQ=12)
                             CCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCC                                                                                           <  1:337397/101‑1 (MQ=14)
                             CCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCC                                                                                           >  2:2193470/1‑101 (MQ=17)
                             CCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCC                                                                                           <  1:894606/101‑1 (MQ=14)
                              CCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCg                                                                                          <  1:370750/101‑2 (MQ=17)
                              CCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCg                                                                                          <  1:1095602/101‑2 (MQ=17)
                              CCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCg                                                                                          <  2:1189001/101‑2 (MQ=17)
                               CACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCga                                                                                         <  2:421808/101‑3 (MQ=17)
                                 CGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACc                                                                                       <  2:3409463/101‑2 (MQ=17)
                                                                                              tACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCA                          >  2:949484/2‑101 (MQ=9)
                                                                                              tACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCA                          <  2:3215378/100‑1 (MQ=9)
                                                                                              CACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCA                          <  2:1288863/101‑1 (MQ=0)
                                                                                                 GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACcg                       >  1:97338/1‑99 (MQ=9)
                                                                                                 GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGG                       >  1:2640600/1‑101 (MQ=0)
                                                                                                 GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGG                       <  2:1010906/101‑1 (MQ=0)
                                                                                                     CCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC                   >  1:1532205/1‑101 (MQ=0)
                                                                                                     CCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC                   <  2:3230250/101‑1 (MQ=0)
                                                                                                     CCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC                   >  1:2491673/1‑101 (MQ=0)
                                                                                                     CCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC                   <  1:3886261/101‑1 (MQ=0)
                                                                                                       GACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCca                 >  1:999493/1‑99 (MQ=0)
                                                                                                       GACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGc                 >  1:1467812/1‑100 (MQ=0)
                                                                                                        ACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGAC                >  1:2915890/1‑101 (MQ=0)
                                                                                                         CCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACC               <  1:595810/101‑1 (MQ=0)
                                                                                                         CCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACC               <  1:3060961/101‑1 (MQ=0)
                                                                                                          CGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCG              <  1:2960612/101‑1 (MQ=0)
                                                                                                           GATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGA             >  1:1314663/1‑101 (MQ=0)
                                                                                                           GATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGA             >  2:319504/1‑101 (MQ=0)
                                                                                                            ATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGAc            >  2:1883700/1‑100 (MQ=0)
                                                                                                               CCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCC         <  2:3278672/101‑1 (MQ=0)
                                                                                                                 cCGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCAC       <  2:3320351/100‑1 (MQ=0)
                                                                                                                 ACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCAC       >  2:4043929/1‑101 (MQ=0)
                                                                                                                   GGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGG     <  1:154222/101‑1 (MQ=0)
                                                                                                                      CCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGAcc  <  2:1532101/101‑3 (MQ=0)
                                                                                                    |||||||||||||||||||                                                                                                    
ATCCCACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGA.......................................................................................................................  <  NC_014034/222139‑222040
.......................................................................................................................CCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATC  <  NC_014034/222101‑222002

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG