New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2256863	233 (1.170)	2 (0.010)	2/188	31.8	0.01	intergenic (+1331/+1138)	RCAP_rcc02088/RCAP_rcc02095	IS3 family transposase/hypothetical protein
	?	NC_014034	= 3086478	169 (0.800)					coding (622/2379 nt)	RCAP_rcc02887	methyl‑accepting chemotaxis sensory transducer
Rejected: Position hash score below cutoff.

TTCAAAGGCAGCCCGGCCGACCCAATCGGCCAGTGTGGAGCGGTCGAGATCGATGTCCTGCCGGGCGTAGATCTGCGCCTGGCGATACAATGGCAGGTGATCGGCG....................................................................................................  >  NC_014034/2256758‑2256863 ....................................................................................................TCGGCGCGTAACGGGCGAAATCGCGAAAGGCGGCGCCCCCGCCGGGAAGCGTCATCGCCTCGCGGAAGACCGCGGCAAGCCCGGTCTCCTTGCCCTCGCCGGTCTG  <  NC_014034/3086478‑3086379                                                                                                                                                                                                                                                            CGAGATCGATGTCCTGCCGGGCGTAGATCTGCGCCTGGCGATACAATGGCAGGTGATCGGCGCGTAACGGGCGAAATCGCGAAAGGCGGCGCCCCCGCCGG                                                               >  2:3931501/1‑101 (MQ=255)                                                                           GCGCCTGGCGATACAATGGCAGGTGATCGGCGCGTAACGGGCGAAATCGCGAAAGGCGGCGCCCCCGCCGGGAAGCGTCATCGCCTCGCGGAAGACCGCGG                                 <  1:3931761/101‑1 (MQ=255)                                                                                                                                                                                                                TTCAAAGGCAGCCCGGCCGACCCAATCGGCCAGTGTGGAGCGGTCGAGATCGATGTCCTGCCGGGCGTAGATCTGCGCCTGGCGATACAATGGCAGGTGATCGGCG....................................................................................................  >  NC_014034/2256758‑2256863 ....................................................................................................TCGGCGCGTAACGGGCGAAATCGCGAAAGGCGGCGCCCCCGCCGGGAAGCGTCATCGCCTCGCGGAAGACCGCGGCAAGCCCGGTCTCCTTGCCCTCGCCGGTCTG  <  NC_014034/3086478‑3086379 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG