New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	2330179 =	44 (0.220)	22 (0.110)	9/190	25.5	0.26	intergenic (+154/+158)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
	?	NC_014034	3276378 =	81 (0.380)					intergenic (‑130/+119)	RCAP_rcc03082/RCAP_rcc03083	lipoprotein/membrane bound YbgT‑like protein
Rejected: Position hash score below cutoff.

GGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGG.................................................................................................  <  NC_014034/2330282‑2330179 ...................................................................................................CGGGGGCGGAGCCCCCG.GCGGGTCGCCGCGCGGCCGCGCGGCGAAACAAAGGACCGACCGGGCAGCCCCCCGGTCGGCCAGTGAACCCGAAACGCGAAGGG  >  NC_014034/3276378‑3276473                                                                                                                                                                                                               TCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGG                                                                                                  <  2:49183/101‑1 (MQ=1)      CTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGC                                                                                                 >  1:3533946/1‑101 (MQ=1)       tgTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCG                                                                                                >  1:2811516/3‑101 (MQ=1)       TTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCG                                                                                                <  1:3904491/101‑1 (MQ=1)       TTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCG                                                                                                >  1:2282420/1‑101 (MQ=1)         TGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGA                                                                                              <  1:3264524/101‑1 (MQ=1)          GGCCGCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAG                                                                                             <  2:2643662/101‑1 (MQ=1)            CCCCAGGGGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCC                                                                                           <  1:817015/101‑1 (MQ=1)               cgtGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCC                                                                                        <  2:3567994/98‑1 (MQ=1)               CAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCC                                                                                        >  1:2533698/1‑101 (MQ=1)                  GTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGcc                                                                                     >  1:2336420/1‑99 (MQ=11)                   TGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGccc                                                                                    <  1:3473446/101‑4 (MQ=31)                    GAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGcccg                                                                                   >  2:2944389/1‑97 (MQ=32)                     AAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGcccgg                                                                                  <  1:2991566/101‑6 (MQ=32)                      AAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGcccggg                                                                                 >  1:3017957/1‑95 (MQ=32)                        GCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGTGGCGGAGCCCCCGcccgggtc                                                                               <  1:3113298/101‑9 (MQ=17)                         CCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCG                                                                              >  2:3224420/1‑101 (MQ=32)                           GCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCC                                                                            >  2:326758/1‑101 (MQ=32)                            CCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCG                                                                           >  2:2392385/1‑101 (MQ=32)                              CGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCG                                                                         >  2:1533669/1‑101 (MQ=32)                              CGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCG                                                                         >  2:1491448/1‑101 (MQ=32)                                GGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCc                                                                       >  2:2500058/1‑100 (MQ=32)                                                                                                                                                                                                           GGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGG.................................................................................................  <  NC_014034/2330282‑2330179 ...................................................................................................CGGGGGCGGAGCCCCCG.GCGGGTCGCCGCGCGGCCGCGCGGCGAAACAAAGGACCGACCGGGCAGCCCCCCGGTCGGCCAGTGAACCCGAAACGCGAAGGG  >  NC_014034/3276378‑3276473 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG