New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	2353359 =	198 (1.030)	2 (0.010)	2/182	31.3	0.01	coding (677/1392 nt)	RCAP_rcc02182	class III aminotransferase
	?	NC_014034	= 3538712	195 (0.920)					intergenic (+18/‑4)	RCAP_rcc03346/prpD	thioesterase superfamily protein/2‑methylcitrate dehydratase
Rejected: Position hash score below cutoff.

GGTCGGAGGGCGGCGATCTGACCCCCGAGGCGTTCGGTCTGGCCCGCGCCCGTCAGCTTGAGGAAAAGATCCTGGAGATCGGCGCCGAAAACGTCGCGGCCTTCATCGG....................................................................................................  <  NC_014034/2353467‑2353359 ....................................................................................................CTTCATCGGGTCTTTCCTTGCTTGTCGTCAGATTGCGGAAGAAAGCGGGCGGGGACGGCCGTCGGCATCGACGGCGACCATCACGAATTGTCCGTCCAGCGCCGGGCGG  <  NC_014034/3538712‑3538613                                                                                                                                                                                                                                                GCGTTCGGTCTGGCCCGCGCCCGTCAGCTTGAGGAAAAGATCCTGGAGATCGGCGCCGAAAACGTCGCGGCCTTCATCGGGTCTTTCCTTGCTTGTCGTCA                                                                                 >  1:1579429/1‑101 (MQ=255)                                          GCCCGCGCCCGTCAGCTTGAGGAAAAGATCCTGGAGATCGGCGCCGAAAACGTCGCGGCCTTCATCGGGTCTTTCCTTGCTTGTCGTCAGATTGCGGAAGA                                                                     <  2:1579320/101‑1 (MQ=255)                                                                                                                                                                                                                   GGTCGGAGGGCGGCGATCTGACCCCCGAGGCGTTCGGTCTGGCCCGCGCCCGTCAGCTTGAGGAAAAGATCCTGGAGATCGGCGCCGAAAACGTCGCGGCCTTCATCGG....................................................................................................  <  NC_014034/2353467‑2353359 ....................................................................................................CTTCATCGGGTCTTTCCTTGCTTGTCGTCAGATTGCGGAAGAAAGCGGGCGGGGACGGCCGTCGGCATCGACGGCGACCATCACGAATTGTCCGTCCAGCGCCGGGCGG  <  NC_014034/3538712‑3538613 Base quality scores:  ATCG  < 3 ≤  ATCG  < 25 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG