New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2486558	207 (1.040)	46 (0.230)	2/188	31.8	0.31	intergenic (‑186/+8)	RCAP_rcc02312/soxG	hypothetical protein/sarcosine oxidase subunit gamma
	?	NC_014034	= 2600943	1 (0.000)					intergenic (+5/‑136)	RCAP_rcc02424/surE	short‑chain dehydrogenase/reductase family oxidoreductase/5'‑nucleotidase SurE
Rejected: Position hash score below cutoff.

CCGGGCAAGTCACCCCCGGGATATTCATGGCAAGATGAAGGAGGCGTGTTTCATCTTGCCATAAATATCCCGGGGGGAGTCCGCAGGACGGGGGGCAGCGCCCCCC..................................................................................................  >  NC_014034/2486453‑2486558 ....................................................................................................CCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACGGCGGT  <  NC_014034/2600943‑2600846                                                                                                                                                                                                                                                                                              agcgaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGG                         >  1:1283864/9‑101 (MQ=1)                                                                                 agcgaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGG                         >  2:2087262/9‑101 (MQ=1)                                                                                   cgaagcgGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAA                       <  1:873441/94‑1 (MQ=1)                                                                                   cgaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAA                       >  2:2727762/7‑101 (MQ=1)                                                                                   cgaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAA                       <  2:2788720/95‑1 (MQ=1)                                                                                   cgaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAA                       <  2:1021469/95‑1 (MQ=1)                                                                                   cgaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAA                       >  2:3768481/7‑101 (MQ=1)                                                                                    gaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAG                      >  1:4178839/6‑101 (MQ=1)                                                                                    gaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAG                      >  1:421916/6‑101 (MQ=1)                                                                                    gaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAG                      <  2:1571067/96‑1 (MQ=1)                                                                                     aagcgGGGGGGCAGCCCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGA                     <  2:468859/96‑1 (MQ=0)                                                                                     aagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGA                     <  1:1838584/97‑1 (MQ=1)                                                                                     aagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGA                     >  1:1736586/5‑101 (MQ=1)                                                                                     aagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGA                     >  1:385319/5‑101 (MQ=1)                                                                                      agcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAA                    <  1:3139348/98‑1 (MQ=1)                                                                                      agcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAA                    <  1:4133838/98‑1 (MQ=1)                                                                                       gcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAG                   >  2:16401/3‑101 (MQ=1)                                                                                       gcCGGGGGGCAGAGCCCCCCGTCCCTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAG                   <  2:491756/99‑1 (MQ=1)                                                                                        cCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGC                  <  1:953562/100‑1 (MQ=1)                                                                                        cCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGC                  >  1:3735395/2‑101 (MQ=1)                                                                                         CGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCG                 >  1:3491404/1‑101 (MQ=1)                                                                                         CGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCG                 <  2:70574/101‑1 (MQ=1)                                                                                          GGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGGAAAAGCGC                >  1:709968/1‑101 (MQ=0)                                                                                          GGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGC                >  1:619148/1‑101 (MQ=1)                                                                                          GGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGC                >  2:2859968/1‑101 (MQ=1)                                                                                          GGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGC                >  1:2700997/1‑101 (MQ=1)                                                                                          GGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGC                >  2:53145/1‑101 (MQ=1)                                                                                          GGGGGGCAGAGCCACCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGC                <  1:2800573/101‑1 (MQ=1)                                                                                           GGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCG               >  1:1153810/1‑101 (MQ=1)                                                                                           GGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCG               >  1:2119152/1‑101 (MQ=1)                                                                                            GGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGC              >  2:205415/1‑101 (MQ=1)                                                                                            GGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGC              >  1:3071558/1‑101 (MQ=1)                                                                                              GGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCC            >  2:2202094/1‑101 (MQ=1)                                                                                                CAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGC          >  1:1596226/1‑101 (MQ=1)                                                                                                CAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGC          <  1:2865566/101‑1 (MQ=1)                                                                                                 agaGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCA         >  2:1698435/4‑101 (MQ=1)                                                                                                 agaGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCA         <  2:2948988/98‑1 (MQ=1)                                                                                                 agaGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCA         >  1:2921195/4‑101 (MQ=1)                                                                                                  gaGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCAC        <  2:944875/99‑1 (MQ=1)                                                                                                  gaGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCAC        >  2:4110648/3‑101 (MQ=1)                                                                                                  gaGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCAC        <  2:3054074/99‑1 (MQ=1)                                                                                                   aGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGTGCCCGCACG       <  2:3951303/100‑1 (MQ=1)                                                                                                   aGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACG       >  1:661193/2‑101 (MQ=1)                                                                                                    GCCCCCCGTCCGTCAGATCTCGGTAAGAAGGCGTTTCACTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACcg      >  2:2650736/1‑99 (MQ=0)                                                                                                    GCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACGG      >  1:3258705/1‑101 (MQ=1)                                                                                                    GCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACGG      >  1:4133126/1‑101 (MQ=1)                                                                                                                                                                                                              CCGGGCAAGTCACCCCCGGGATATTCATGGCAAGATGAAGGAGGCGTGTTTCATCTTGCCATAAATATCCCGGGGGGAGTCCGCAGGACGGGGGGCAGCGCCCCCC..................................................................................................  >  NC_014034/2486453‑2486558 ....................................................................................................CCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACGGCGGT  <  NC_014034/2600943‑2600846 Base quality scores:  ATCG  < 3 ≤  ATCG  < 22 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG