New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 2533350 =208 (1.060)3 (0.020) 3/186 30.5 0.01 coding (32/1401 nt) gltX2 glutamyl‑tRNA synthetase
?NC_014034 3634784 = 196 (0.930)coding (203/822 nt) livF3 branched‑chain amino acid ABC transporter ATP‑binding protein LivF
Rejected: Position hash score below cutoff.

GGTATCCTCGATCCTGAGCAGGAAGGTGCCGCCATGGCCGCGGGCAAAGAGCCAGTTGAAAAGCGCCGTCCGGGCGCCGCCGATATGCAGGTAGCCGGTGGGCGAGG..................................................................................................  <  NC_014034/2533456‑2533350
....................................................................................................GGCGAGGTGACGAAGGGCGCGATCCTTTACCGCGGCGAGCGGGTGCAGGACATGTCCCCCGCCGATCTGGTGCGCAAGGGCGTCATCCAGGTGATGGAGGGGCGG  >  NC_014034/3634784‑3634881
                                                                                                                                                                                                             
                                                     AGTTGAAAAGCGCCGTCCGGGCGCCGCCGATATGCAGGTAGCCGGTGGGCGAGGTGACGAAGGGCGCGATCCTTTACCGCGGCGAGCGGGTGCAGGACATG                                                     >  1:3681113/1‑101 (MQ=255)
                                                         GAAAAGCGCCGCCCGGGCGCCGCCGATATGCAGGTAGCCGGTGGGCGAGGTGACGAAGGGCGCGATCCTTTACCGCGGCGAGCGGGTGCAGGACATGTCCC                                                 <  2:3680859/101‑1 (MQ=255)
                                                                                                   GGGCGAGGTGACGAAGGGCGCGATCCTTTACCGCGGCGAGCGGGTGCAGGACATGTCCCCCGCCGATCTGGTGCGCAAGGGCGTCATCCAGGTGATGGAGG       <  1:161980/101‑1 (MQ=255)
                                                                                                                                                                                                             
GGTATCCTCGATCCTGAGCAGGAAGGTGCCGCCATGGCCGCGGGCAAAGAGCCAGTTGAAAAGCGCCGTCCGGGCGCCGCCGATATGCAGGTAGCCGGTGGGCGAGG..................................................................................................  <  NC_014034/2533456‑2533350
....................................................................................................GGCGAGGTGACGAAGGGCGCGATCCTTTACCGCGGCGAGCGGGTGCAGGACATGTCCCCCGCCGATCTGGTGCGCAAGGGCGTCATCCAGGTGATGGAGGGGCGG  >  NC_014034/3634784‑3634881

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 30 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG