New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 2656224143 (0.730)2 (0.010) 2/186 31.7 0.01 coding (812/1032 nt) RCAP_rcc02474 hypothetical protein
?NC_014034 3549660 = 189 (0.890)coding (605/1455 nt) cobQ2 cobyric acid synthase CobQ
Rejected: Position hash score below cutoff.

CGGCTCGGTCTGGAAAATGCCGCGCGGCCTTCGGCAAACGGGGGCACGGAAGACGGGGCCGCGCGCGCGGCGATCAACGGGGCGGAACTGGCCGCCCTTGCGCCGGA...................................................................................................  >  NC_014034/2656118‑2656224
....................................................................................................CGCCGGATCGCCGCGGAATTTCGTCACGATCACGCCGCCCACCCGGGCGCGTTCGGAAGCGGTCCAAAGGTGATGATGCCCGATCACCGCCGCCGTCACCCCGCCG  >  NC_014034/3549660‑3549758
                                                                                                                                                                                                              
                                                      GGGGCCGCGCGCGCGGCGATCAACGGGGCGGAACTGGCCGCCCTTGCGCCGGATCGCCGCGGAATTTCGTCACGATCACGCCGCCCACCCGGGCGCGTTCG                                                     >  2:560150/1‑101 (MQ=255)
                                                               CGCGCGGCGATCAACGGGGCGGAACTGGCCGCCCTTGCGCCGGATCGCCGCGGAATTTCGTCACGATCACGCCGCCCACCCGGGCGCGTTCGGAAGCGGTC                                            <  1:560214/101‑1 (MQ=255)
                                                                                                                                                                                                              
CGGCTCGGTCTGGAAAATGCCGCGCGGCCTTCGGCAAACGGGGGCACGGAAGACGGGGCCGCGCGCGCGGCGATCAACGGGGCGGAACTGGCCGCCCTTGCGCCGGA...................................................................................................  >  NC_014034/2656118‑2656224
....................................................................................................CGCCGGATCGCCGCGGAATTTCGTCACGATCACGCCGCCCACCCGGGCGCGTTCGGAAGCGGTCCAAAGGTGATGATGCCCGATCACCGCCGCCGTCACCCCGCCG  >  NC_014034/3549660‑3549758

Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 31 ≤  ATCG  < 33 ≤  ATCG  < 38 ≤  ATCG