New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 2683644 =220 (1.040)2 (0.010) 2/198 32.7 0.01 coding (384/1152 nt) RCAP_rcc02499 ABC transporter permease
?NC_014034 2683665 = 218 (1.030)coding (363/1152 nt) RCAP_rcc02499 ABC transporter permease
Rejected: Position hash score below cutoff.

CCCGGGCTTCACCGGCACGCCGAACCTGAAGGACCCAGCCTGCACGCGCGAAAAGATCCCGGCGCATGAACGCTTTTTCAAGATGATCGGCGATTATCTG..................................  <  NC_014034/2683743‑2683644
....................................................................................................GAAAAAGCGTTCATGCGCCGGGATCTTTTCGCGC  >  NC_014034/2683665‑2683698
                                                                                                                                      
CCCGGGGTTCACCGGCACGCCGAACCTGAAGGACCCAGCCTGCACGCGCGAAAAGATCCCGGGGCATGAACGCTTTTTCAAGATGATCGGCGATTATCTGG                                   <  2:2230932/101‑1 (MQ=255)
CCCGGGCTTCACCGGCACGCCGAACCTGAAGGACCCAGCCTGCACGCGCGAAAAGATCCCGGCGCATGAACGCTTTTTCAAGATGATCGGCGATTATCTGG                                   >  1:2155580/1‑101 (MQ=255)
CCCGGGCTTCACCGGCACGCCGAACCTGAAGGACCCAGCCTGCACGCGCGAAAAGATCCCGGCGCATGAACGCTTTTTCAAGATGATCGGCGATTATCTGG                                   >  2:2885542/1‑101 (MQ=255)
                    CGAACCTGAAGGACCCAGCCTGCACGCGCGAAAAGATCCCGGCGCATGAACGCTTTTTCAAGATGATCGGCGATTATCT.GAAAAAGCGTTCATGCGCCGGG              >  1:3912341/1‑101 (MQ=255)
                                ACCCAGCCTGCACGCGCGAAAAGATCCCGGCGCATGAACGCTTTTTCAAGATGATCGGCGATTATCT.GAAAAAGCGTTCATGCGCCGGGATCTTTTCGCGC  <  2:3912082/101‑1 (MQ=255)
                                                                                                                                      
CCCGGGCTTCACCGGCACGCCGAACCTGAAGGACCCAGCCTGCACGCGCGAAAAGATCCCGGCGCATGAACGCTTTTTCAAGATGATCGGCGATTATCTG..................................  <  NC_014034/2683743‑2683644
....................................................................................................GAAAAAGCGTTCATGCGCCGGGATCTTTTCGCGC  >  NC_014034/2683665‑2683698

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG