New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 2885799 =179 (0.910)3 (0.020) 3/186 30.5 0.02 coding (415/1101 nt) RCAP_rcc02693 permease YjgP/YjgQ family protein
?NC_014034 3018510 = 176 (0.830)coding (563/1281 nt) RCAP_rcc02829 hypothetical protein
Rejected: Position hash score below cutoff.

GACGGTGGCGCTGCTGATCGGCGTCCTGCTGGTCGCGGTCGGCAATCCGATCGTTTCCGCCACCAGCAAGCGCGCCGAGGAGATCGAGGGCCAGCTGCGCGCCGAGG....................................................................................................  <  NC_014034/2885905‑2885799
....................................................................................................GCCGAGGCGCAGACCGCGGGCGTGATGGAAGAGGCCGAAACCGAGATGATCGCCGGGGTGATGCGGATTGCCGACCGCTCCGCACGGGGCGTGATGACGCCGCGCCA  >  NC_014034/3018510‑3018609
                                                                                                                                                                                                               
                            CTGGTCGCGGTCGGCAATCCGATCGTTTCCGCCACCAGCAAGCGCGCCGAGGAGATCGAGGGCCAGCTGCGCGCCGAGGCGCAGACCGCGGGCGTGATGGA                                                                                <  2:1749944/101‑1 (MQ=255)
                              GGTCGCGGTCGGCAATCCGATCGTTTCCGCCACCAGCAAGCGCGCCGAGGAGATCGAGGGCCAGCTGCGCGCCGAGGCGCAGACCGCGGGCGTGATGGAAG                                                                              >  1:1750063/1‑101 (MQ=255)
                                                                                                 ctCGCCGAGGCGCAGACCGCGGGCGTGATGGAAGAGGCCGAAACCGAGATGATCGCCGGGGTGATGCGGATTGCCGACCGCTCCGCACGGGGCGTGATGAC           <  2:2759188/99‑1 (MQ=255)
                                                                                                                                                                                                               
GACGGTGGCGCTGCTGATCGGCGTCCTGCTGGTCGCGGTCGGCAATCCGATCGTTTCCGCCACCAGCAAGCGCGCCGAGGAGATCGAGGGCCAGCTGCGCGCCGAGG....................................................................................................  <  NC_014034/2885905‑2885799
....................................................................................................GCCGAGGCGCAGACCGCGGGCGTGATGGAAGAGGCCGAAACCGAGATGATCGCCGGGGTGATGCGGATTGCCGACCGCTCCGCACGGGGCGTGATGACGCCGCGCCA  >  NC_014034/3018510‑3018609

Base quality scores:  ATCG  < 3 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG