New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 305596 =90 (0.470)4 (0.020) 4/180 28.9 0.03 coding (1347/1386 nt) RCAP_rcc00268 M16 family peptidase
?NC_014034 3023865 = 215 (1.010)intergenic (‑43/+24) chvG/chvI sensor histidine kinase ChvG/transcriptional regulator ChvI
Rejected: Position hash score below cutoff.

CCGAGGACGTGATCGCCGCGGCGACGGCGCTGTTCGATCCGGCGCGCTCGGTGACGGTCTTTGCCGAAACCGCGGGCACCGCCGCCCCGGCATCCGCCGCCCCCGCC....................................................................................................  <  NC_014034/305702‑305596
.................................................................................................CGCCCCCGCCTTGCTGCAAGAAATCCGGCAATGGTCATTCTTCGTTGTAACGATAACCGATGCCGTAAAGCGTCTCGATCGCCGAGAAATCGTCATCCACCGTGCGCATC  >  NC_014034/3023865‑3023964
                                                                                                                                                                                                               
                                                          CTTTGCCGAAACCGCGGGCACCGCCGCCCCGGCATCCGCCGCCCCCGCCTTGCTGCAAGAAATCCGGCAATGGTCATTCTTCGTTGTAACGATAACCGATG                                                  >  2:4101327/1‑101 (MQ=255)
                                                                 GAAACCGCGGGCCCCGCCGCCCCGGCATCCGCCGCCCCCGCCTTGCTGCAAGAAATCCGGCAATGGTCATTCTTCGTTGTAACGATAACCGATGCCGTAAA                                           <  1:4101588/101‑1 (MQ=255)
                                                                                              ccCCGCCCCCGCCTTGCTGCAAGAAATCCGGCAATGGTCATTCTTCGTTGTAACGATAACCGATGCCGTAAAGCGTCTCGATCGCCGAGAAATCGTCATCC              <  1:549552/99‑1 (MQ=255)
                                                                                                CCGCCCCCGCCTTGCTGCAAGAAATCCGGCAATGGTCATTCTTCGTTGTAACGATAACCGATGCCGTAAAGCGTCTCGATCGCCGAGAAATCGTCATCCAC            <  1:4021565/101‑1 (MQ=255)
                                                                                                                                                                                                               
CCGAGGACGTGATCGCCGCGGCGACGGCGCTGTTCGATCCGGCGCGCTCGGTGACGGTCTTTGCCGAAACCGCGGGCACCGCCGCCCCGGCATCCGCCGCCCCCGCC....................................................................................................  <  NC_014034/305702‑305596
.................................................................................................CGCCCCCGCCTTGCTGCAAGAAATCCGGCAATGGTCATTCTTCGTTGTAACGATAACCGATGCCGTAAAGCGTCTCGATCGCCGAGAAATCGTCATCCACCGTGCGCATC  >  NC_014034/3023865‑3023964

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG