New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	3481399 =	204 (1.060)	2 (0.010)	2/182	31.3	0.01	coding (162/582 nt)	rnfA	electron transport complex protein RnfA
	?	NC_014034	= 3723369	211 (1.000)					coding (145/786 nt)	flgG	flagellar basal‑body rod protein FlgG
Rejected: Position hash score below cutoff.

CGTCTCGATGAACTGCACGATCGCGGCGATGACCAGGATCATGCTCAGGATGCGCAGGAATTTCAGGTCGAGCGGTTCCAGGATCAGCGCCTCGACCAGCCAGCAGGCG....................................................................................................  <  NC_014034/3481507‑3481399 ....................................................................................................CAGCAGGCGACCCGCCCGGGCACGATCACCGCCAACGACGGCACCATCGTTCCCGCGGGCGTGCAGATCGGTCTGGGCGTGCGCTCGACCGCGGTCAGCATCACCCTGG  <  NC_014034/3723369‑3723270                                                                                                                                                                                                                                                    CAGGATCATGCTCAGGATGCGCAGGAATTTCAGGTCGAGCGGTTCCAGGATCAGCGCCTCGACCAGCCAGCAGGCGACCCGCCCGGGCACGATCACCGCCA                                                                             >  1:2041669/1‑101 (MQ=255)                                                                CAGGTCGAGCGGTTCCAGGATCAGCGCCTCGACCAGCCAGCAGGCGACCCGCCCGGGCACGATCACCGCCAACGACGGCACCATCGTTCCCGCGGGCGTGC                                               <  2:2041531/101‑1 (MQ=255)                                                                                                                                                                                                                   CGTCTCGATGAACTGCACGATCGCGGCGATGACCAGGATCATGCTCAGGATGCGCAGGAATTTCAGGTCGAGCGGTTCCAGGATCAGCGCCTCGACCAGCCAGCAGGCG....................................................................................................  <  NC_014034/3481507‑3481399 ....................................................................................................CAGCAGGCGACCCGCCCGGGCACGATCACCGCCAACGACGGCACCATCGTTCCCGCGGGCGTGCAGATCGGTCTGGGCGTGCGCTCGACCGCGGTCAGCATCACCCTGG  <  NC_014034/3723369‑3723270 Base quality scores:  ATCG  < 3 ≤  ATCG  < 23 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG