New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	3689917 =	218 (1.110)	2 (0.010)	2/186	25.2	0.01	coding (1079/1656 nt)	fliF	flagellar M‑ring protein FliF
	?	NC_014035	16749 =	134 (0.950)					coding (354/837 nt)	RCAP_rcp00023	NAD‑dependent epimerase/dehydratase family protein
Rejected: Position hash score below cutoff.

ACGACGCGGGAAGTGCTGCGCAATCCGGGCGACATCAAGCGCCTGACCGTTGCCGTTCTGGTCGACGGGGTCGAGGGCAAGGACGCGAATGGCGTCACGGCGATCAC....................................................................................................  <  NC_014034/3690023‑3689917 ....................................................................................................CGATCACGCCTTATGGTCAGGCAAAAGCATCCTTGCATGAGGAGCTTGGCCGGATCTGCGGGCCGAGGCTGATCTGGGCGCGGCTCTTTCACCTTTACGGTCCCGGC  >  NC_014035/16749‑16848                                                                                                                                                                                                                                                         GCCTGACCGTTGCCGTTCTGGTCGACGGGGTCGAGGGCAAGGACGCGAATGGCGTCACGGCGATCACGCCTTATGGTCAGGCAAAAGCATCCTTGCATGAG                                                                    >  2:2470449/1‑101 (MQ=255)                                             GACCGTTGCCGTTCTGGTCGACGGGGTCGAGGGCAAGGACGCGAATGGCGTCACGGCGATCACGCCTTATGGTCAGGCAAAAGCATCCTTGCATGAGGAGC                                                                <  1:2470633/101‑1 (MQ=255)                                                                                                                                                                                                                 ACGACGCGGGAAGTGCTGCGCAATCCGGGCGACATCAAGCGCCTGACCGTTGCCGTTCTGGTCGACGGGGTCGAGGGCAAGGACGCGAATGGCGTCACGGCGATCAC....................................................................................................  <  NC_014034/3690023‑3689917 ....................................................................................................CGATCACGCCTTATGGTCAGGCAAAAGCATCCTTGCATGAGGAGCTTGGCCGGATCTGCGGGCCGAGGCTGATCTGGGCGCGGCTCTTTCACCTTTACGGTCCCGGC  >  NC_014035/16749‑16848 Base quality scores:  ATCG  < 3 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG