New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 3719175173 (0.880)2 (0.010) 2/186 31.7 0.01 coding (985/1158 nt) RCAP_rcc03510 hypothetical protein
?NC_014034 3719209 = 193 (0.910)coding (1019/1158 nt) RCAP_rcc03510 hypothetical protein
Rejected: Position hash score below cutoff.

AGGCGACCGCGGGCGAGACGATGACGGACCGGCTCGGCTCGTTCCTGCTGGCGCAGACCGGGGCCCGGTCGCTGACGGCGAAGGACGGAACCGGCCCGGATGCGG....................................................................................................  >  NC_014034/3719071‑3719175
..................................................................................................GATGCGGCGCAATTCGACGCGGCTCTGACCGAAATCGCGGCCCTGCCCGAAGCGGCGCAGGCCGATCTGCAACCCTGGAAGGACATGGTGGCCAAGCGCGCGAGCGC  >  NC_014034/3719209‑3719308
                                                                                                                                                                                                             
                                                atctGCAGACCGGGGCCCGGTCGCTGACGGCGAAGGACGGAACCGGCCCGGATGCGGCGCAATTCGACGCGGCTCTGACCGAAATCGCGGCCCTGCCCGAA                                                          <  1:2685223/97‑1 (MQ=255)
                                                    GCAGACCGGGGCCCGGTCGCTGACGGCGAAGGACGGAACCGGCCCGGATGCGGCGCAATTCGACGCGGCTCTGACCGAAATCGCGGCCCTGCCCGAAagat                                                      >  2:2685017/1‑97 (MQ=255)
                                                                                                                                                                                                             
AGGCGACCGCGGGCGAGACGATGACGGACCGGCTCGGCTCGTTCCTGCTGGCGCAGACCGGGGCCCGGTCGCTGACGGCGAAGGACGGAACCGGCCCGGATGCGG....................................................................................................  >  NC_014034/3719071‑3719175
..................................................................................................GATGCGGCGCAATTCGACGCGGCTCTGACCGAAATCGCGGCCCTGCCCGAAGCGGCGCAGGCCGATCTGCAACCCTGGAAGGACATGGTGGCCAAGCGCGCGAGCGC  >  NC_014034/3719209‑3719308

Base quality scores:  ATCG  < 3 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 40 ≤  ATCG