New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	390805 =	40 (0.250)	31 (0.200)	21/150	14.6	0.43	intergenic (‑121/+168)	mipZ/rpmE	chromosome partitioning protein MipZ/50S ribosomal protein L31
	?	NC_014034	1732895 =	43 (0.200)					intergenic (‑319/‑84)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
Rejected: Position hash score below cutoff.

TGTTTGCGCGGCGCCACCCGACCGCCAGAGGGGGCTCCGCCCCCCTTTTCCTTGGCAAAATACGCTGGGGGGGTGCGGGGGGCGAAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAA....................................................................................................  <  NC_014034/390928‑390805 ...................................................................................................CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAAAGGAGCGCCCGATGACCCAGTTCAGCT  >  NC_014034/1732895‑1732994                                                                                                                                                                                                                                                                                                         gggggGGGGGGTGAACCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGG                                                      <  1:3523073/96‑1 (MQ=255)                                                                           ggGGGGGGTGACCCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCC                                                   <  1:629571/99‑1 (MQ=255)                                                                            CGGGGGGTGAAGCCCCCCGCGGGGCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCCTCGCTTTCCCTTTCGGCCCG                                                  >  2:4157530/1‑101 (MQ=255)                                                                             GGGGGGTGAAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGG                                                 >  2:3048376/1‑101 (MQ=17)                                                                             GGGGGGTGAAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGG                                                 >  1:3420310/1‑101 (MQ=17)                                                                             GGGGGGTGAAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAACTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCcg                                                 >  1:3548913/1‑99 (MQ=12)                                                                              GGGGGTGAAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGC                                                <  2:3477174/101‑1 (MQ=17)                                                                               GGGGTGAACCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCG                                               <  2:4186570/101‑1 (MQ=12)                                                                                  ggGAACCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTG                                            <  1:2428288/99‑1 (MQ=11)                                                                                   tGAAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGC                                           >  2:1137093/2‑101 (MQ=14)                                                                                     accCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTA                                         <  1:1658138/98‑1 (MQ=1)                                                                                     AAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGCAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCCCTGCTA                                         >  1:407361/1‑101 (MQ=2)                                                                                     AAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTA                                         >  1:3209876/1‑101 (MQ=11)                                                                                      AGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGGAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAA                                        >  2:3135306/1‑101 (MQ=1)                                                                                      AGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAA                                        <  1:57306/101‑1 (MQ=1)                                                                                      AGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAA                                        >  1:245476/1‑101 (MQ=1)                                                                                      AGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAA                                        <  2:1884527/101‑1 (MQ=1)                                                                                      AGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCCCGCGTCGCTTTCCCTTTCGGCCCCGCGCTGCTAA                                        >  1:142163/1‑101 (MQ=0)                                                                                       cccgcggcgGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAA                                       <  1:752122/92‑1 (MQ=0)                                                                                        CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAAC                                      <  2:3856734/101‑1 (MQ=1)                                                                                          CCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTCCGGCCCGGCGCTGCTAAACGC                                    <  1:2409251/101‑1 (MQ=1)                                                                                             CGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACaggcg                                 >  1:3411169/1‑96 (MQ=1)                                                                                             CGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCG                                 <  1:3181313/101‑1 (MQ=1)                                                                                               CGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCC                               >  1:1125441/1‑101 (MQ=1)                                                                                               CGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCC                               >  2:3572385/1‑101 (MQ=1)                                                                                                GGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCA                              >  1:162642/1‑101 (MQ=1)                                                                                                GGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCA                              <  1:1470032/101‑1 (MQ=1)                                                                                                GGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCA                              <  1:751935/101‑1 (MQ=1)                                                                                                 GGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCca                             >  2:1481210/1‑99 (MQ=1)                                                                                                 GGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAA                             <  2:1583532/101‑1 (MQ=1)                                                                                                   TCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAAAG                           <  1:3905345/101‑1 (MQ=1)                                                                                                                                                                                                                                  TGTTTGCGCGGCGCCACCCGACCGCCAGAGGGGGCTCCGCCCCCCTTTTCCTTGGCAAAATACGCTGGGGGGGTGCGGGGGGCGAAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAA....................................................................................................  <  NC_014034/390928‑390805 ...................................................................................................CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAAAGGAGCGCCCGATGACCCAGTTCAGCT  >  NC_014034/1732895‑1732994 Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 20 ≤  ATCG  < 32 ≤  ATCG  < 39 ≤  ATCG