New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 392466	22 (0.110)	37 (0.190)	5/188	28.6	0.54	intergenic (‑114/+29)	RCAP_rcc00363/trmD	hypothetical protein/tRNA (guanine‑N1)‑methyltransferase
	?	NC_014034	= 3701428	40 (0.190)					intergenic (+5/+44)	grpE/mutS	GrpE protein/DNA mismatch repair protein MutS
Rejected: Position hash score below cutoff.

CTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGC....................................................................................................  >  NC_014034/392362‑392466 ...................................................................................................CCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAATGATGTCAC  <  NC_014034/3701428‑3701329                                                                                                                                                                                                                                                                                 ctgaAAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTG                                        >  1:781147/5‑101 (MQ=25)                                                                    tgaAAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGC                                       >  2:2184899/4‑101 (MQ=25)                                                                       AAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGC                                    >  1:1911397/1‑101 (MQ=35)                                                                       AAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGC                                    >  2:2929956/1‑101 (MQ=35)                                                                       AAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGC                                    >  1:2867942/1‑101 (MQ=35)                                                                        AATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCA                                   >  1:3226108/1‑101 (MQ=35)                                                                        AATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCA                                   >  1:3143322/1‑101 (MQ=35)                                                                          TATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGG                                 >  1:434579/1‑101 (MQ=34)                                                                           ATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGA                                >  2:3556274/1‑101 (MQ=33)                                                                           ATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGA                                >  1:2717069/1‑101 (MQ=33)                                                                           ATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGA                                >  1:3448503/1‑101 (MQ=33)                                                                            TCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAA                               >  1:1548015/1‑101 (MQ=32)                                                                             cctGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAG                              >  2:3050833/4‑101 (MQ=31)                                                                               tGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGCCGGTCGTGCAGCAGGAAGCC                            >  1:91862/2‑101 (MQ=1)                                                                                 GGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGT                          >  1:2141691/1‑101 (MQ=1)                                                                                  GGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTC                         >  2:2405829/1‑101 (MQ=1)                                                                                   GGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCG                        >  1:3542474/1‑101 (MQ=1)                                                                                      CCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCC                     >  2:968903/1‑101 (MQ=1)                                                                                       CGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCA                    >  2:2464848/1‑101 (MQ=1)                                                                                        GGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCAT                   >  2:418347/1‑101 (MQ=1)                                                                                        GGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCAT                   >  2:2501952/1‑101 (MQ=1)                                                                                         GGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATC                  >  2:959142/1‑101 (MQ=1)                                                                                           GGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCAC                >  1:3066262/1‑101 (MQ=1)                                                                                             cgaAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCT              >  2:232205/4‑101 (MQ=1)                                                                                             cgaAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCT              >  2:2327365/4‑101 (MQ=1)                                                                                             cgaAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCT              >  2:2358971/4‑101 (MQ=1)                                                                                              gaAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTG             >  1:312518/3‑101 (MQ=1)                                                                                              gaAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTG             >  2:2773174/3‑101 (MQ=1)                                                                                              gaAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTG             >  2:1841542/3‑101 (MQ=1)                                                                                               cccCCCCCCCCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGA            <  1:3581228/98‑1 (MQ=0)                                                                                               cccCCCCCCCCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGA            <  2:2300746/98‑1 (MQ=0)                                                                                               cccCCCCCCCCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGA            <  2:2237235/98‑1 (MQ=0)                                                                                                 cCCCCCGCCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAAT          <  1:2819396/100‑1 (MQ=1)                                                                                                 GCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAAT          >  2:499485/1‑101 (MQ=1)                                                                                                 GCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGCAAGACGTCGTCCATCACTTGAAT          >  2:1282283/1‑101 (MQ=0)                                                                                                  CCCCCCCCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAATG         <  2:2964161/101‑1 (MQ=0)                                                                                                   CCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAATGA        >  1:2155682/1‑101 (MQ=1)                                                                                                                                                                                                               CTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGC....................................................................................................  >  NC_014034/392362‑392466 ...................................................................................................CCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAATGATGTCAC  <  NC_014034/3701428‑3701329 Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 30 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG