New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 40197	215 (1.140)	2 (0.010)	2/178	30.9	0.01	coding (7/1104 nt)	RCAP_rcc00033	hypothetical protein
	?	NC_014034	= 3484561	173 (0.820)					coding (600/1080 nt)	rnfD	electron transport complex protein RnfD
Rejected: Position hash score below cutoff.

GCCGACAAAGACCGGCCGGATATCGGCGCTTGGCTCGGGCGTATAGGCGATCTCTCCGCGCGGGGCGCAGCTGATCAGGGCAAGAAAGGCGGCAACGACAAGAAGACGGCT....................................................................................................  >  NC_014034/40087‑40197 ....................................................................................................AGAAGACGGCTTTCCAGATCCGCCAGCGTCGGGAGGATCTCGCCCATCGTCGCGCCCGCGCTGATCTGGCTCTTGATGTGGCTCAGCGTCGAGGCGGAGGAGACGGCGTCG  <  NC_014034/3484561‑3484462                                                                                                                                                                                                                                                                TAGGCGATCTCTCCGCGCGGGGCGCAGCTGATCAGGGCAAGAAAGGCGGCAACGACAAGAAGACGGCTTTCCAGATCCGCCAGCGTCGGGAGGATCTCGCC                                                                     >  1:4233796/1‑101 (MQ=255)                                                                           TCAGGGCAAGAAAGGCGGCAACGACAAGAAGACGGCTTTCCAGATCCGCCAGCGTCGGGAGGATCTCGCCCATCGTCGCGCCCGCGCTGATCTGGCTCTTG                                      <  2:4233534/101‑1 (MQ=255)                                                                                                                                                                                                                     GCCGACAAAGACCGGCCGGATATCGGCGCTTGGCTCGGGCGTATAGGCGATCTCTCCGCGCGGGGCGCAGCTGATCAGGGCAAGAAAGGCGGCAACGACAAGAAGACGGCT....................................................................................................  >  NC_014034/40087‑40197 ....................................................................................................AGAAGACGGCTTTCCAGATCCGCCAGCGTCGGGAGGATCTCGCCCATCGTCGCGCCCGCGCTGATCTGGCTCTTGATGTGGCTCAGCGTCGAGGCGGAGGAGACGGCGTCG  <  NC_014034/3484561‑3484462 Base quality scores:  ATCG  < 3 ≤  ATCG  < 31 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 39 ≤  ATCG