New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 408497122 (0.610)2 (0.010) 2/190 32.0 0.02 intergenic (+115/+33) glnA1/dapA glutamine synthetase/dihydrodipicolinate synthase
?NC_014034 408498 = 122 (0.580)intergenic (+116/+32) glnA1/dapA glutamine synthetase/dihydrodipicolinate synthase
Rejected: Position hash score below cutoff.

AAGACGGGGG.......................................................................................................  >  NC_014034/408488‑408497
...............GCCCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGTTGCATCGCGGCGTCAAGCGCGGCCTTGGTCCCGTCGGTCAGTTCGGT  >  NC_014034/408498‑408595
          |||||                                                                                                  
atgcgGGGGGCACCCCCCCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGTTGCATCGCGGCGTCAAGCGCGGCCTTGGTCCCGTC              <  2:2782890/96‑1 (MQ=255)
         GCCGCCCCCCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGTTGCATCGCGGCGTCAAGCGCGGCCTTGGTCCCGTCGGTCAGTTC     <  2:1998476/101‑1 (MQ=2)
            CCCCCCCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGTTGCATCGCGGCGTCAAGCGCGGCCTTGGTCCCGTCGGTCAGTTCGGT  <  1:2582327/101‑1 (MQ=11)
          |||||                                                                                                  
AAGACGGGGG.......................................................................................................  >  NC_014034/408488‑408497
...............GCCCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGTTGCATCGCGGCGTCAAGCGCGGCCTTGGTCCCGTCGGTCAGTTCGGT  >  NC_014034/408498‑408595

Base quality scores:  ATCG  < 3 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG