New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_014034 | = 433602 | 168 (0.870) | 2 (0.010) | 2/182 | 31.3 | 0.01 | intergenic (‑98/‑35) | RCAP_rcc00404/RCAP_rcc00405 | Sua5/YciO/YrdC/YwlC family protein/acyl‑CoA dehydrogenase domain‑containing protein |
? | NC_014034 | = 1493887 | 172 (0.810) | coding (41/2184 nt) | uvrB | UvrABC system protein B | |||||
Rejected: Position hash score below cutoff. |
ATTTCCTGCATCCCACCCTCGTGACGCTGCGTTGCGGTGGACGGGGGCTTCCCTTGCGGTAACCTTTCCCCGAAACCGACCCGAATTTGCCCCACGCATACGCGCCCCG.................................................................................................... > NC_014034/433494‑433602
....................................................................................................CGCGCCCCGAGGTTCTGACCCGTCCGAAGCTTGAGGGCGGCAAGCGATTCGTGATGAAGAGCGAATTTTCCCCCGCGGGCGACCAGCCGACGGCGATTGCGGAGATCTC < NC_014034/1493887‑1493788
GGCTTCCCTTGCGGTAACCTTTCCCCGAAACCGACCCGAATTTGCCCCACGCATACGCGCCCCGAGGTTCTGACCCGTCCGAAGCTTGAGGGCGGCAAGCG > 1:2891041/1‑101 (MQ=255)
AACCGACCCGAATTTGCCCCACGCATACGCGCCCCGAGGTTCTGACCCGTCCGAAGCTTGAGGGCGGCAAGCGATTCGTGATGAAGAGCGAATTTTCCCCC < 2:2890822/101‑1 (MQ=255)
ATTTCCTGCATCCCACCCTCGTGACGCTGCGTTGCGGTGGACGGGGGCTTCCCTTGCGGTAACCTTTCCCCGAAACCGACCCGAATTTGCCCCACGCATACGCGCCCCG.................................................................................................... > NC_014034/433494‑433602
....................................................................................................CGCGCCCCGAGGTTCTGACCCGTCCGAAGCTTGAGGGCGGCAAGCGATTCGTGATGAAGAGCGAATTTTCCCCCGCGGGCGACCAGCCGACGGCGATTGCGGAGATCTC < NC_014034/1493887‑1493788
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 31 ≤
ATCG
< 34 ≤
ATCG
< 35 ≤
ATCG
< 41 ≤
ATCG
|