New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 440018	158 (0.820)	34 (0.180)	4/182	29.1	0.22	intergenic (+53/+3)	RCAP_rcc00411/RCAP_rcc00412	S58 family peptidase/arylformamidase
	?	NC_014034	1640015 =	82 (0.390)					intergenic (+95/‑50)	mccB/mccA	methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha
Rejected: Position hash score below cutoff.

CGCCGCCACGCCCCGCCCGGGCGACCGGCAACCCAGCTGGCAAGACCTGCGCTGATCCCTTTTATCTTGCCGCAAATATCCCGGGGGGTCAGGGGGGCAGCGCCCCCC....................................................................................................  >  NC_014034/439911‑440018 ...................................................................................................GCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCGGGT  >  NC_014034/1640015‑1640114                                                                                                                                                                                                                                                                               tcATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGT                                                >  1:15707/3‑101 (MQ=1)                                                              tcATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGT                                                >  1:1838639/3‑101 (MQ=1)                                                              tcATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGT                                                >  1:2241139/3‑101 (MQ=1)                                                               cATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTT                                               >  2:1963307/2‑101 (MQ=1)                                                               cATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTT                                               >  2:1814031/2‑101 (MQ=1)                                                               cATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTT                                               >  1:204490/2‑101 (MQ=1)                                                                ATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTT                                              >  1:3487541/1‑101 (MQ=1)                                                                 TCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTC                                             >  2:4220085/1‑101 (MQ=1)                                                                 TCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTC                                             >  2:3738016/1‑101 (MQ=1)                                                                      cccCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAG                                        >  2:1861649/4‑101 (MQ=1)                                                                          AAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCC                                    >  1:939176/1‑101 (MQ=1)                                                                          AAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCC                                    >  2:3708778/1‑101 (MQ=1)                                                                           AATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCT                                   >  1:2303192/1‑101 (MQ=1)                                                                            ATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTG                                  >  1:2178667/1‑101 (MQ=1)                                                                            ATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTG                                  >  2:47642/1‑101 (MQ=1)                                                                             TATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGTCGAAGGAGACCGCGATGTTTCAAAAGATCCTGA                                 >  1:3677459/1‑101 (MQ=1)                                                                              ATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGAT                                >  1:4056427/1‑101 (MQ=1)                                                                              ATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGAT                                >  2:2341522/1‑101 (MQ=1)                                                                                nCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCNGATCn                              >  1:963020/2‑100 (MQ=1)                                                                                 CCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCNGTTGACGAAGGNGACCGCGATGTNTCAAAAGATCCTGATCGC                             >  1:247721/1‑101 (MQ=1)                                                                                   GGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGAACGCGATGTTTCAAAAGATCCTGATCGCCA                           >  2:527490/1‑101 (MQ=1)                                                                                    GGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAA                          >  2:3486806/1‑101 (MQ=1)                                                                                     GGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAAC                         >  2:853025/1‑101 (MQ=1)                                                                                      gggcccGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACA                        >  2:2985159/7‑101 (MQ=1)                                                                                      gggcccGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACA                        >  2:2196054/7‑101 (MQ=1)                                                                                          ccGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGC                    >  1:3313296/3‑101 (MQ=1)                                                                                           cGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCC                   >  2:1975314/2‑101 (MQ=1)                                                                                            GGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGGCG                  >  2:3565146/1‑101 (MQ=1)                                                                                            GGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCG                  >  2:1130248/1‑101 (MQ=1)                                                                                            GGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCG                  >  2:4049892/1‑101 (MQ=1)                                                                                               GGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGA               >  2:2053851/1‑101 (MQ=1)                                                                                                  CAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCG            >  2:306223/1‑101 (MQ=1)                                                                                                   AGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGC           >  2:4070547/1‑101 (MQ=1)                                                                                                   AGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGC           >  1:2273980/1‑101 (MQ=1)                                                                                                                                                                                                                  CGCCGCCACGCCCCGCCCGGGCGACCGGCAACCCAGCTGGCAAGACCTGCGCTGATCCCTTTTATCTTGCCGCAAATATCCCGGGGGGTCAGGGGGGCAGCGCCCCCC....................................................................................................  >  NC_014034/439911‑440018 ...................................................................................................GCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCGGGT  >  NC_014034/1640015‑1640114 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 37 ≤  ATCG