New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 456144	189 (0.910)	28 (0.130)	3/196	31.3	0.20	intergenic (+99/+7)	RCAP_rcc00426/panC	hypothetical protein/pantoate‑‑beta‑alanine ligase
	?	NC_014034	= 2330173	42 (0.200)					intergenic (+148/+164)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

TGATCCCGGCCGCACCCGCGCGAGGGGCGTATTTTTGCCAAGAAGAAACGATGCGGTTTTTCCTGGTCCAAATACGCCGGGGGTCCGGGGGCAGCGCCCCCG....................................................................................................  >  NC_014034/456043‑456144 ....................................................................................................CGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGCCGA  <  NC_014034/2330173‑2330074                                                                                                                                                                                                                                                                               gCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGC                                    >  1:2508570/2‑101 (MQ=11)                                                                     CAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCG                                   >  1:2927213/1‑101 (MQ=14)                                                                      AAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGC                                  >  2:2662518/1‑101 (MQ=32)                                                                        ATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGC                                <  2:1130215/101‑1 (MQ=32)                                                                         TACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCC                               >  1:676115/1‑101 (MQ=32)                                                                         TACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCC                               >  1:1937040/1‑101 (MQ=32)                                                                         TACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCC                               >  1:111910/1‑101 (MQ=32)                                                                            GCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTT                            >  2:2471634/1‑101 (MQ=32)                                                                              CGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGC                          >  1:3678837/1‑101 (MQ=32)                                                                                  GGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCC                      >  2:804673/1‑101 (MQ=32)                                                                                    tgCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCT                    >  2:531145/3‑101 (MQ=32)                                                                                     ggGGGGGCGGCCCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTT                   <  1:2500242/99‑1 (MQ=0)                                                                                     gCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTT                   >  1:1201300/2‑101 (MQ=32)                                                                                      gGGGGGCGGCGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTG                  <  2:1376707/100‑1 (MQ=1)                                                                                      CGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTG                  >  2:2913913/1‑101 (MQ=32)                                                                                       GGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGG                 >  2:3896242/1‑101 (MQ=32)                                                                                       GGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGG                 >  2:3529538/1‑101 (MQ=32)                                                                                       GGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGG                 >  1:612223/1‑101 (MQ=32)                                                                                          ggcggaGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGG              >  1:2267797/7‑101 (MQ=31)                                                                                          gcgcgccCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGG              <  1:2374538/94‑1 (MQ=0)                                                                                             ggaGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGG           >  1:1738679/4‑101 (MQ=1)                                                                                             ggaGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGG           >  1:3210951/4‑101 (MQ=1)                                                                                              gaGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGC          >  2:2589968/3‑101 (MQ=1)                                                                                              gaGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGC          >  2:3030/3‑101 (MQ=1)                                                                                               aGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCC         >  1:2023306/2‑101 (MQ=1)                                                                                                cCCCCGGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCA        <  2:938380/100‑1 (MQ=1)                                                                                                cCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCA        <  2:783732/100‑1 (MQ=1)                                                                                                   CCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGC     >  1:3054466/1‑101 (MQ=1)                                                                                                                                                                                                            TGATCCCGGCCGCACCCGCGCGAGGGGCGTATTTTTGCCAAGAAGAAACGATGCGGTTTTTCCTGGTCCAAATACGCCGGGGGTCCGGGGGCAGCGCCCCCG....................................................................................................  >  NC_014034/456043‑456144 ....................................................................................................CGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGCCGA  <  NC_014034/2330173‑2330074 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG