New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 530939	106 (0.540)	70 (0.360)	35/184	12.4	0.31	intergenic (+17/+124)	valS/RCAP_rcc00497	valyl‑tRNA synthetase/UbiA prenyltransferase
	?	NC_014034	3609079 =	208 (0.980)					intergenic (+18/‑153)	clpB/dinB	chaperone ClpB/DNA polymerase IV
Rejected: Position hash score below cutoff.

GATCGAGGAAGCCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTC..................................  >  NC_014034/530832‑530939 ....................................................................................................GGGGGCTCTG.CCCCCGCTTCGCTCCCCCCGGGATATTTGGG  >  NC_014034/3609079‑3609111                                                                                                                                                        AAGCCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT                                   <  2:1718474/101‑1 (MQ=255)         AAGCCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT                                   <  2:2015408/101‑1 (MQ=255)         AAGCCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT                                   <  2:2232954/101‑1 (MQ=255)          AGCCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG                                  <  1:103595/101‑1 (MQ=255)           GCCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTcc                                 >  1:381454/1‑99 (MQ=255)           GCCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.C                                <  2:1785140/101‑1 (MQ=255)             CCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCC                              <  1:3550059/101‑1 (MQ=255)              CGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCC                             >  1:1126552/1‑101 (MQ=255)              CGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAAGGGGGCTCTG.CCCC                             >  2:415733/1‑101 (MQ=255)               GCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCC                            >  2:3692051/1‑101 (MQ=255)               GCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCC                            <  1:3586054/101‑1 (MQ=255)               GCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCC                            <  2:2199773/101‑1 (MQ=255)                CGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCCc                           <  1:4234517/101‑2 (MQ=255)                CGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCCc                           <  2:3176491/101‑2 (MQ=255)                CGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCCc                           <  2:3625684/101‑2 (MQ=255)                 GAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCCcg                          <  2:1189939/101‑3 (MQ=255)                 GAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCCcg                          >  2:1601768/1‑99 (MQ=255)                 GAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCCcg                          <  1:753047/101‑3 (MQ=255)                  AAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCCcgc                         >  1:2344928/1‑98 (MQ=255)                   AAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCCcgct                        >  1:2358273/1‑97 (MQ=255)                    AACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCCcgctt                       >  1:870239/1‑96 (MQ=255)                    AACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCCcgctt                       <  1:361000/101‑6 (MQ=255)                    AACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCCcgctt                       <  2:2994429/101‑6 (MQ=255)                    AACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCCcccct                       >  2:2986167/1‑96 (MQ=255)                     ACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTC                       <  1:2531105/101‑1 (MQ=255)                     ACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTC                       <  1:229116/101‑1 (MQ=255)                     ACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTC                       <  2:2791864/101‑1 (MQ=255)                      CCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCG                      >  2:1354601/1‑101 (MQ=255)                       cgCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCGGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGC                     <  1:838380/99‑1 (MQ=255)                        TCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCT                    >  2:2625438/1‑101 (MQ=255)                        TCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCT                    >  2:3648348/1‑101 (MQ=255)                         CGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTC                   >  1:3445579/1‑101 (MQ=255)                         CGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTC                   >  2:3404766/1‑101 (MQ=255)                         CGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTC                   <  1:2628658/101‑1 (MQ=255)                         CGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCCCTC                   >  2:2088779/1‑101 (MQ=255)                             GCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCC               <  2:3451276/101‑1 (MQ=255)                             GCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCC               <  2:3481731/101‑1 (MQ=255)                              CGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCC              <  1:4130277/101‑1 (MQ=255)                              CGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCC              <  1:3815494/101‑1 (MQ=255)                               GCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCG             <  2:2240603/101‑1 (MQ=255)                               GCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCG             <  2:3366067/101‑1 (MQ=255)                               GCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCG             <  1:281399/101‑1 (MQ=255)                                CGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGG            <  2:769047/101‑1 (MQ=255)                                 GCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGG           <  1:96060/101‑1 (MQ=255)                                 GCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGG           >  1:3956528/1‑101 (MQ=255)                                 GCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGG           <  1:2675887/101‑1 (MQ=255)                                  CGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGA          >  2:1312961/1‑101 (MQ=255)                                  CGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGA          <  2:794406/101‑1 (MQ=255)                                  CGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGA          >  1:1978009/1‑101 (MQ=255)                                   ggGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGTAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGAT         <  1:3640250/99‑1 (MQ=255)                                   GCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGct         >  1:1576386/1‑99 (MQ=255)                                    CGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATA        <  2:1069263/101‑1 (MQ=255)                                    CGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATA        <  1:80306/101‑1 (MQ=255)                                    CGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATA        >  2:733836/1‑101 (MQ=255)                                    CGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATA        <  1:1690883/101‑1 (MQ=255)                                     GGAAGAGGCGGCGAAGATGGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATAT       <  1:1606434/101‑1 (MQ=255)                                     GGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATAT       <  1:3549417/101‑1 (MQ=255)                                      GAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATATT      >  2:2987316/1‑101 (MQ=255)                                       AAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATATTT     >  1:1974813/1‑101 (MQ=255)                                       AAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATATTT     >  1:3160480/1‑101 (MQ=255)                                        AGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATATTTt    <  2:607751/101‑2 (MQ=255)                                        AGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATATTTt    <  2:811852/101‑2 (MQ=255)                                        AGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATATTTt    >  1:4093463/1‑100 (MQ=255)                                        AGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATATTTt    >  1:788967/1‑100 (MQ=255)                                         GAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATATTTtc   <  2:2275278/101‑3 (MQ=255)                                         GAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATATTTtc   <  2:1709315/101‑3 (MQ=255)                                          AGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATATTTtcg  >  1:2456427/1‑98 (MQ=255)                                          AGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATATTTtcg  <  1:501055/101‑4 (MQ=255)                                          AGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATATTTtcg  <  1:1119140/101‑4 (MQ=255)                                          AGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATATTTtcg  <  2:2078966/101‑4 (MQ=255)                                                                                                                                                GATCGAGGAAGCCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTC..................................  >  NC_014034/530832‑530939 ....................................................................................................GGGGGCTCTG.CCCCCGCTTCGCTCCCCCCGGGATATTTGGG  >  NC_014034/3609079‑3609111 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 38 ≤  ATCG