New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 536203 =198 (1.020)2 (0.010) 2/184 31.5 0.01 coding (664/1410 nt) RCAP_rcc00502 type II and III secretion system protein
?NC_014034 = 802307 198 (0.930)coding (42/1038 nt) maoC MaoC domain‑containing protein
Rejected: Position hash score below cutoff.

CAGCAGCACGCCGAATTCCATGTTGCCGACGGTGAAGCCAAGGCCCAGCGCGCCCTGGGTAGAGGCCGAAATCGGCATCGTGCCCTTGTCGAAGGCATTGCCCACCGC....................................................................................................  <  NC_014034/536310‑536203
....................................................................................................CCCACCGCGTAATCCTCGAAGAAACGGCCCGGATTCGTCTTCGTCGCCATCTTACTGCTCTCCCAGTTTCAGATCGGGGTGATATTCGCCCGGCACATCCTTCACCAC  <  NC_014034/802307‑802208
                                                                                                                                                                                                                
                                                       TGGGTAGAGGCCGAAATCGGCATCGTGCCCTTGTCGAAGGCATTGCCCACCGCGTAATCCTCGAAGAAACGGCCCGGATTCGTCTTCGTCGCCATCTTACT                                                      >  1:2645157/1‑101 (MQ=255)
                                                                          GCATCGTGCCCTTGTCGAAGGCATTGCCCACCGCGTAATCCTCGAAGAAACGGCCCGGATTCGTCTTCGTCGCCATCTTACTGCTCTCCCAGTTTCAGATC                                   <  2:2644951/101‑1 (MQ=255)
                                                                                                                                                                                                                
CAGCAGCACGCCGAATTCCATGTTGCCGACGGTGAAGCCAAGGCCCAGCGCGCCCTGGGTAGAGGCCGAAATCGGCATCGTGCCCTTGTCGAAGGCATTGCCCACCGC....................................................................................................  <  NC_014034/536310‑536203
....................................................................................................CCCACCGCGTAATCCTCGAAGAAACGGCCCGGATTCGTCTTCGTCGCCATCTTACTGCTCTCCCAGTTTCAGATCGGGGTGATATTCGCCCGGCACATCCTTCACCAC  <  NC_014034/802307‑802208

Base quality scores:  ATCG  < 3 ≤  ATCG  < 34 ≤  ATCG  < 35 ≤  ATCG  < 36 ≤  ATCG  < 41 ≤  ATCG