New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	565304 =	186 (0.940)	53 (0.270)	24/186	16.8	0.29	intergenic (+119/+43)	RCAP_rcc00526/RCAP_rcc00527	dimethylglycine dehydrogenase/family 25 glycosyl hydrolase
	?	NC_014034	= 1303912	75 (0.350)					intergenic (+99/+58)	urtE/RCAP_rcc01231	urea ABC transporter ATP‑binding protein UrtE/UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
Rejected: Position hash score below cutoff.

CAACGCCTTTGCAGGCTCGCGCGCGGCCTGGGGCGCCTGGCTCTCTGCCCGCGCCCAGCGCTGAACGGAGAAAGGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAA...........................................................................................  <  NC_014034/565410‑565304 ....................................................................................................CGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGGAGGCAGCGC  <  NC_014034/1303912‑1303822                                                                                                                                                                                                                                                                     cccgccccGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCA                                      <  1:3730453/93‑1 (MQ=255)                                                              cccgccccGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCA                                      <  2:289724/93‑1 (MQ=255)                                                               ccgccccGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAA                                     <  2:3852948/94‑1 (MQ=255)                                                                 gccccGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAAT                                   >  1:1398393/6‑101 (MQ=255)                                                                 gccccGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAAT                                   <  2:3697804/96‑1 (MQ=255)                                                                  ccccGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGCGAAAGGATGGGGTTTATCTTGCCCCAAATA                                  >  2:723395/5‑101 (MQ=255)                                                                   cccGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATAT                                 <  2:940815/98‑1 (MQ=255)                                                                   cccGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATAT                                 <  1:536724/98‑1 (MQ=255)                                                                      GAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCC                              >  1:2592976/1‑101 (MQ=255)                                                                      GAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCC                              <  2:2171381/101‑1 (MQ=255)                                                                      GAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCC                              <  2:1086767/101‑1 (MQ=255)                                                                       AAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGGGAAAGGATGGGGGTTATCTTGCCCCAAATATCCCG                             >  1:131524/1‑101 (MQ=255)                                                                         aaGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGG                           >  2:1863998/3‑101 (MQ=37)                                                                          aGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGG                          >  2:4098878/2‑101 (MQ=37)                                                                          aGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGG                          >  1:529732/2‑101 (MQ=37)                                                                           GGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGG                         >  2:1643891/1‑101 (MQ=37)                                                                           GGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGG                         <  1:1490286/101‑1 (MQ=37)                                                                            GGGGCGCTGCCGCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGGGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGT                        >  2:2833149/1‑101 (MQ=255)                                                                            GGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGg                        >  2:2878552/1‑100 (MQ=25)                                                                            GGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGg                        >  2:4027452/1‑100 (MQ=25)                                                                            GGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGT                        >  2:3483856/1‑101 (MQ=35)                                                                             GGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGGTTATCTTGCCCCAAATATCCCGGGGGTG                       >  1:4120356/1‑101 (MQ=25)                                                                              GGCGCTTCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGA                      <  1:4120101/101‑1 (MQ=25)                                                                              GGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGA                      <  1:439035/101‑1 (MQ=35)                                                                               GCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAG                     <  2:3270389/101‑1 (MQ=35)                                                                               GCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAG                     <  1:1022427/101‑1 (MQ=35)                                                                                 GCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGC                   <  1:2938077/101‑1 (MQ=35)                                                                                 GCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGC                   >  2:3670734/1‑101 (MQ=35)                                                                                  CTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCG                  <  2:1726524/101‑1 (MQ=35)                                                                                  CTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCG                  <  1:1622618/101‑1 (MQ=35)                                                                                  CTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGAAATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCG                  >  1:960724/1‑101 (MQ=25)                                                                                   TGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGA                 >  2:2099847/1‑101 (MQ=34)                                                                                   TGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGA                 >  1:1871320/1‑101 (MQ=34)                                                                                   TGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGA                 <  1:3326953/101‑1 (MQ=34)                                                                                    GCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAA                <  1:1799896/101‑1 (MQ=33)                                                                                     CCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAG               <  2:2184501/101‑1 (MQ=32)                                                                                      CCCCCTCTTGGCCTTCGGCCAATTCCCCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGC              <  2:960633/101‑1 (MQ=17)                                                                                       CCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCC             <  2:2571253/101‑1 (MQ=32)                                                                                          CTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGag          >  2:2388111/1‑99 (MQ=11)                                                                                           TCTTGGCTTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGagg         <  2:2369860/101‑4 (MQ=0)                                                                                           TCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGagg         >  2:679986/1‑98 (MQ=1)                                                                                             TTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGagggg       >  2:2813146/1‑96 (MQ=1)                                                                                             TTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGagggg       <  1:181312/101‑6 (MQ=1)                                                                                             TTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGagggg       >  2:2328502/1‑96 (MQ=1)                                                                                             TTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGagggg       >  2:1305288/1‑96 (MQ=1)                                                                                              TGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGaggggg      >  2:2102987/1‑95 (MQ=0)                                                                                               GGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGagggggc     >  1:534082/1‑94 (MQ=0)                                                                                               GGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGagggggc     >  1:4103132/1‑94 (MQ=0)                                                                                               GGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGagggggc     <  2:3236168/101‑8 (MQ=0)                                                                                                GCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGagggggcg    >  2:3666121/1‑93 (MQ=0)                                                                                                  CTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGagggggcagc  <  1:4099139/101‑11 (MQ=0)                                                                                                  CTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGagggggcagc  <  2:376901/101‑11 (MQ=0)                                                                                                  CTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGagggggcagc  >  2:1153230/1‑91 (MQ=0)                                                                                                                                                                                                        CAACGCCTTTGCAGGCTCGCGCGCGGCCTGGGGCGCCTGGCTCTCTGCCCGCGCCCAGCGCTGAACGGAGAAAGGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAA...........................................................................................  <  NC_014034/565410‑565304 ....................................................................................................CGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGGAGGCAGCGC  <  NC_014034/1303912‑1303822 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG