New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 565336	207 (1.030)	43 (0.210)	28/190	15.5	0.22	intergenic (+151/+11)	RCAP_rcc00526/RCAP_rcc00527	dimethylglycine dehydrogenase/family 25 glycosyl hydrolase
	?	NC_014034	1303939 =	92 (0.430)					intergenic (+126/+31)	urtE/RCAP_rcc01231	urea ABC transporter ATP‑binding protein UrtE/UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
Rejected: Position hash score below cutoff.

CGCAAGGGCGTATTTGGACCAAGAAAAAGCGGGCGTGTTTTTTCTTGGTGAAAATACGCCGGGGGGAGACTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCC....................................................................................................  >  NC_014034/565234‑565336 ..................................................................................................CCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGCGCGCCGAG  >  NC_014034/1303939‑1304038                                                                                                                                                                                                                                                                  atatcCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCG                                                   >  2:3302172/6‑101 (MQ=12)                                                       tatcCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGC                                                  >  2:282599/5‑101 (MQ=9)                                                       tatcCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGC                                                  <  2:438978/97‑1 (MQ=9)                                                        ccccgGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCC                                                 <  1:2944731/96‑1 (MQ=12)                                                        atcCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCC                                                 >  2:1217831/4‑101 (MQ=2)                                                        atcCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCC                                                 >  1:508911/4‑101 (MQ=2)                                                        atcCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCC                                                 >  2:3571587/4‑101 (MQ=2)                                                        atcCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCC                                                 >  2:614280/4‑101 (MQ=2)                                                         tcCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCC                                                >  2:777840/3‑101 (MQ=0)                                                          cCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCc                                               >  1:2686425/2‑100 (MQ=0)                                                          cCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCG                                               >  1:1811778/2‑101 (MQ=0)                                                           CCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGC                                              <  1:3236409/101‑1 (MQ=0)                                                               GGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCA                                          >  1:1267025/1‑101 (MQ=14)                                                               GGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCA                                          <  2:1805826/101‑1 (MQ=17)                                                                 ggtgaaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGG                                        <  2:1490184/95‑1 (MQ=17)                                                                 ggtgaaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGG                                        <  1:3744536/95‑1 (MQ=17)                                                                 ggtgaaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGG                                        >  2:2108071/7‑101 (MQ=14)                                                                  gtgaaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGG                                       >  1:859231/6‑101 (MQ=14)                                                                    gaaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTC                                     <  2:86585/98‑1 (MQ=1)                                                                     aaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCT                                    >  2:3677760/3‑101 (MQ=11)                                                                      aTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTT                                   <  1:3889132/100‑1 (MQ=14)                                                                      aTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTT                                   >  2:1772094/2‑101 (MQ=14)                                                                      aTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTT                                   <  2:920928/100‑1 (MQ=14)                                                                       TTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTG                                  >  1:1707650/1‑101 (MQ=32)                                                                        TGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTatc                                 >  2:3568170/1‑98 (MQ=17)                                                                        TGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTcc                                 >  2:1452735/1‑99 (MQ=17)                                                                        TGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGC                                 >  1:1293546/1‑101 (MQ=32)                                                                        TGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGC                                 >  2:2141158/1‑101 (MQ=32)                                                                         GGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCG                                >  2:3798482/1‑101 (MQ=32)                                                                           CCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCA                              >  2:2330204/1‑101 (MQ=32)                                                                            CGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCAC                             >  1:768462/1‑101 (MQ=32)                                                                             GAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACC                            >  2:1181236/1‑101 (MQ=31)                                                                             GAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACC                            >  2:1631221/1‑101 (MQ=31)                                                                              AAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCG                           <  1:2517444/101‑1 (MQ=11)                                                                               AGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGG                          <  2:1689231/101‑1 (MQ=1)                                                                               AGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCACCGCATCCCCAAGCCCGCCCGCATCAGGGCCTTGCGCACCGG                          >  1:2730796/1‑101 (MQ=0)                                                                                GGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGC                         >  2:206591/1‑101 (MQ=1)                                                                                  CCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTT                       <  2:3837480/101‑1 (MQ=1)                                                                                  CCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTT                       <  2:2694938/101‑1 (MQ=1)                                                                                  CCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTT                       >  1:3974830/1‑101 (MQ=1)                                                                                    AAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGA                     >  2:2333683/1‑101 (MQ=1)                                                                                     AGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAA                    >  1:3506749/1‑101 (MQ=1)                                                                                      GAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAAC                   >  1:169244/1‑101 (MQ=1)                                                                                      GAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAAC                   >  1:1179547/1‑101 (MQ=1)                                                                                          GGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCct               >  1:3211655/1‑99 (MQ=1)                                                                                          GGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCAT               <  1:552135/101‑1 (MQ=1)                                                                                           GGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATA              <  2:2336286/101‑1 (MQ=1)                                                                                            ggcccCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAA             <  2:495037/96‑1 (MQ=1)                                                                                            GGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAA             >  1:1381043/1‑101 (MQ=1)                                                                                             GCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAA            <  1:1466554/101‑1 (MQ=1)                                                                                             GCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAA            <  2:749433/101‑1 (MQ=1)                                                                                              CAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAG           <  2:2545846/101‑1 (MQ=1)                                                                                               AGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGC          >  1:3037535/1‑101 (MQ=1)                                                                                                GCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAACG         >  1:3800748/1‑101 (MQ=1)                                                                                                  GCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGCGCG       >  1:3029792/1‑101 (MQ=1)                                                                                                                                                                                                             CGCAAGGGCGTATTTGGACCAAGAAAAAGCGGGCGTGTTTTTTCTTGGTGAAAATACGCCGGGGGGAGACTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCC....................................................................................................  >  NC_014034/565234‑565336 ..................................................................................................CCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGCGCGCCGAG  >  NC_014034/1303939‑1304038 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG