New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	681121 =	12 (0.070)	39 (0.230)	14/160	19.4	0.31	coding (2486/6438 nt)	RCAP_rcc00630	ice nucleation protein repeat family protein
	?	NC_014034	= 2232351	163 (0.770)					coding (2157/2772 nt)	RCAP_rcc02068	ice nucleation protein repeat family protein
Rejected: Position hash score below cutoff.

GGGCTGACCTCGGCGCAGATGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGT....................................................................................................  <  NC_014034/681239‑681121 ...................................................................................................CTCGGCACCGATGACATCGTGGCGCTGACGACCGGTCAGGCCGCCGCGCTGAGCTCGACGCAGGTGGCGGCGCTCAGCACGGCGCAGATCTCCGCGCTGCAGACGGCGGATTTCGCCGCG  <  NC_014034/2232351‑2232252                                                                                                                                                                                                                                                TGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTG                                                                                                     <  2:621098/101‑1 (MQ=1)                    TGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTG                                                                                                     >  2:2006800/1‑101 (MQ=1)                    TGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTG                                                                                                     <  1:3998391/101‑1 (MQ=1)                      GCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGC                                                                                                   <  1:4196210/101‑1 (MQ=1)                       CCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCG                                                                                                  >  2:1116459/1‑101 (MQ=1)                         GCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCT                                                                                                >  1:116740/1‑101 (MQ=1)                         GCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCT                                                                                                <  2:3045110/101‑1 (MQ=1)                          CGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTG                                                                                               <  1:2965703/101‑1 (MQ=1)                           GCTGAGCACGACGCCGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGACCAAGGGGCTCGGCACCGATGACATCGTGGCGCTGc                                                                                              >  2:2476925/1‑100 (MQ=0)                           GCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGA                                                                                              >  1:188795/1‑101 (MQ=1)                            CTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGAC                                                                                             <  2:724654/101‑1 (MQ=1)                            CTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGAC                                                                                             <  2:386776/101‑1 (MQ=1)                            CTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGAC                                                                                             >  2:2268405/1‑101 (MQ=1)                             TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                            >  2:3768971/1‑101 (MQ=1)                             TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                            >  2:3173425/1‑101 (MQ=1)                             TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                            >  1:1727738/1‑101 (MQ=1)                              GAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGA                                                                                           >  1:3109555/1‑101 (MQ=1)                               AGCACGGCGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGAC                                                                                          <  1:3482095/101‑1 (MQ=1)                               AGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGCTGACATCGTGGCGCTGACGAC                                                                                          <  1:3118963/101‑1 (MQ=1)                               AGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGAC                                                                                          <  2:4012875/101‑1 (MQ=1)                               AGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGAC                                                                                          >  1:2684716/1‑101 (MQ=1)                                GCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACg                                                                                         <  2:570188/101‑2 (MQ=1)                                 CACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACgg                                                                                        >  1:2791572/1‑99 (MQ=1)                                 CACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACgg                                                                                        >  2:1750863/1‑99 (MQ=1)                                  ACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggc                                                                                       <  1:2199396/101‑4 (MQ=1)                                   CGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggcg                                                                                      <  1:2463190/101‑5 (MQ=1)                                    GACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggcgc                                                                                     >  2:1253766/1‑96 (MQ=1)                                    GACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggcgc                                                                                     >  1:520833/1‑96 (MQ=1)                                     ACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggcgca                                                                                    >  1:503909/1‑95 (MQ=1)                                       GCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCTCCGATGACATCGTGGCGCTGACGACggcgcagg                                                                                  >  1:3673976/1‑93 (MQ=1)                                       GCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggcgcagg                                                                                  <  2:2562303/101‑9 (MQ=1)                                        CAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGC                                                                                 >  2:1978355/1‑101 (MQ=1)                                        CAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGC                                                                                 >  1:1421808/1‑101 (MQ=1)                                        CAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGC                                                                                 >  1:1396855/1‑101 (MQ=1)                                         AGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCg                                                                                >  2:18185/1‑100 (MQ=1)                                         AGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCg                                                                                <  1:1497315/101‑2 (MQ=1)                                         AGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCg                                                                                >  1:411905/1‑100 (MQ=1)                                         AGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCg                                                                                <  2:421467/101‑2 (MQ=1)                                         AGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCg                                                                                >  1:1294279/1‑100 (MQ=1)                                                                                                                                                                                                                             GGGCTGACCTCGGCGCAGATGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGT....................................................................................................  <  NC_014034/681239‑681121 ...................................................................................................CTCGGCACCGATGACATCGTGGCGCTGACGACCGGTCAGGCCGCCGCGCTGAGCTCGACGCAGGTGGCGGCGCTCAGCACGGCGCAGATCTCCGCGCTGCAGACGGCGGATTTCGCCGCG  <  NC_014034/2232351‑2232252 Base quality scores:  ATCG  < 3 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG